CX300877

Overview
NameCX300877
Unique NameCX300877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4976 contig Csv1_Contig4976:483..1012. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300877 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.179e-11
Identity = 28/76 (36.84%), Postives = 48/76 (63.16%), Query Frame = 2 
Query:  107 GGESIGFLDIVFGVIGYWLPIYEEAGSMQTHT-QKFPAIAEWTTKFVNHPVIKENLPSTESLLPFFRQVHEFVSSA 331
            GGE  G +DI    I +W+PI++E   +Q  T +KFP + +W+ +F+NHP + E LP  + L  +F+  +E +S++
Sbjct:  149 GGEEFGLVDIAAVFIAFWIPIFQEIAGLQLFTSEKFPILYKWSQEFLNHPFVHEVLPPRDPLFAYFKARYESLSAS 224
The following BLAST results are available for this feature:
BLAST of CX300877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GSTX6_SOYBN8.179e-1136.84Probable glutathione S-transferase OS=Glycine max ... [more]
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Properties
Property NameValue
Genbank descriptionC08003C01SK PhyRootSw1 Citrus sinensis cDNA clone C08003C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300877 ID=CX300877; Name=CX300877; organism=Citrus sinensis; type=EST; length=530bp
TGCGAAAGGAGAGGCAAAAGAGAAGATTGAAAAAGAAGTAATAGAAGGAT
TGGAAAAGATAGATGGAGCAATCAAAGAGAAGAGCAACCTGTTTAATAGT
GCTGCCGGAGGAGAGAGCATTGGTTTTTTGGACATTGTATTTGGAGTCAT
CGGTTACTGGCTGCCTATTTATGAAGAAGCCGGTTCAATGCAAACACACA
CTCAGAAATTTCCAGCCATTGCTGAATGGACCACCAAGTTTGTCAATCAC
CCTGTCATCAAAGAAAACTTACCATCCACTGAGAGCTTGCTTCCGTTTTT
CCGCCAAGTCCATGAGTTTGTATCATCAGCATCCAACAACTAATTATTTT
AAGCTTGAAATTAAGTTAACTAATAAGGGACTCTTTTGGAGATCGCCATC
ATGTTATGGTGTTCAACTAGTAGTGTGATGTTGTGTGGAAAGTCTTGTAC
TGCATTTTCCTTTTTCTTTGTACCCTTTCTTTCAATTTCATCAATAAAAT
TACTCTTTCGATTAAAAAAAAAAAAAAAAA
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