FC871830

Overview
NameFC871830
Unique NameFC871830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2749 contig Csv1_Contig2749:136..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.448e-48
Identity = 93/110 (84.55%), Postives = 101/110 (91.82%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 331
            VA QTKAIA+++ +W NVV+AYEPVWAIGTGKVA+PAQAQEVHAELRKWL  NVS EVAASTRIIYGGSVNGANCKEL  QPDVDGFLVGGASLKPEFIDIIK+A VK+N
Sbjct:  144 VAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVGGASLKPEFIDIIKAAEVKRN 253          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 7.680e-48
Identity = 94/110 (85.45%), Postives = 102/110 (92.73%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 331
            VA QTKAIA+KIS+WDNVVLAYEPVWAIGTGKVA+PAQAQEVHA LRKW  DNVSAEV+ASTRIIYGGSV+G+NCKEL  Q DVDGFLVGGASLKPEFIDIIK+A VKK+
Sbjct:   85 VAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLKPEFIDIIKAAEVKKS 194          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.711e-47
Identity = 90/110 (81.82%), Postives = 101/110 (91.82%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 331
            VA QTKAIAEK+S+W N+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKW+K+NV A+VA S RIIYGGSVNGAN KELA QPD+DGFLVGGASLKPEF+DIIKSATVK +
Sbjct:  144 VAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVGGASLKPEFVDIIKSATVKSS 253          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 3.812e-47
Identity = 93/108 (86.11%), Postives = 99/108 (91.67%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 325
            VAEQTKAIA+KI +W NVV+AYEPVWAIGTGKVA+PAQAQEVHA LR WLK NVS EVA STRIIYGGSV GA+CKELAAQPDVDGFLVGGASLKPEFIDII +ATVK
Sbjct:  144 VAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 8.492e-47
Identity = 93/108 (86.11%), Postives = 96/108 (88.89%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 325
            VA QTKAIAEKI +W NVV+AYEPVWAIGTGKVATPAQAQEVHA LR WLK N S EVA STRIIYGGSV  ANCKELAAQPDVDGFLVGGASLKPEFIDII +ATVK
Sbjct:  144 VAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 8.492e-47
Identity = 90/110 (81.82%), Postives = 100/110 (90.91%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 331
            VA QTKAIA++++NW NVV+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL  NVSA+VAA+TRIIYGGSVNG NCKEL  Q DVDGFLVGGASLKPEFIDIIK+A VKK+
Sbjct:  144 VAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLKPEFIDIIKAAEVKKS 253          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 7.189e-46
Identity = 92/108 (85.19%), Postives = 97/108 (89.81%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 325
            VA QTKAI+E+I +W NVV+AYEPVWAIGTGKVATP QAQEVH  LRKWL  NVSAEVA STRIIYGGSV GANCKELAA+PDVDGFLVGGASLKPEFIDII SATVK
Sbjct:  144 VAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPEFIDIINSATVK 251          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 6.086e-45
Identity = 91/108 (84.26%), Postives = 95/108 (87.96%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 325
            VAEQTKAIA KI +W N V+AYEPVWAIGTGKVATPAQAQEVHA LR WLK NVS EVA STRIIYGGSV GA+CKELAAQ DVDGFLVGGASLKPEFIDII +A VK
Sbjct:  144 VAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLKPEFIDIINAAAVK 251          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.188e-40
Identity = 80/104 (76.92%), Postives = 87/104 (83.65%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 313
            V EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  144 VFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_MACFA (Triosephosphate isomerase OS=Macaca fascicularis GN=TPI1 PE=2 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.188e-40
Identity = 80/104 (76.92%), Postives = 87/104 (83.65%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 313
            V EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  144 VFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
The following BLAST results are available for this feature:
BLAST of FC871830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PETHY3.448e-4884.55Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_LACSA7.680e-4885.45Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_COPJA1.711e-4781.82Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_SECCE3.812e-4786.11Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_MAIZE8.492e-4786.11Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ARATH8.492e-4781.82Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_ORYSJ7.189e-4685.19Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_HORVU6.086e-4584.26Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_MACMU1.188e-4076.92Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]
TPIS_MACFA1.188e-4076.92Triosephosphate isomerase OS=Macaca fascicularis G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK1DC12FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871830 ID=FC871830; Name=FC871830; organism=Citrus sinensis; type=EST; length=577bp
TGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACA
ATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTT
GCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCT
TAAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAACCTGAT
GTGGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATCGA
TATTATCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAAGACCAAGCT
ACTCGGCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCGTTCTGGAAACT
AGCGTTGTAATTTTTGTGGTCTGTTAAGTGTTACCAACGCCTTTCCAGTA
TAATAAGTTAAATCTTCAGAATTCTTAAGAATCTCTTTCCTATTTCAGTG
GGGATTTGAAACTTATCATTGTGGATTTAATAAATGGTTGCTTTTCCCTT
CTTGCAAAAAAAAAAAAAAAAAAAAAA
back to top