EY664990

Overview
NameEY664990
Unique NameEY664990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7988 contig Csv1_Contig7988:1..930. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of EY664990 vs. ExPASy Swiss-Prot
Match: GOGC1_ARATH (Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.416e-20
Identity = 59/120 (49.17%), Postives = 67/120 (55.83%), Query Frame = 1 
Query:   61 RAAAEFQLEKETNRLQXXXXXXXXXXXXXXXXXXXXXXXXMKSLEPLPLHHRHIVGASVQLQKAAKLLDSGAVRATRFLWRYPIARIIXXXXXXXXXXXXXXXXXRLQEQADNFAAREVA 420
            +AAAEFQLEKE  RL                         +K+LEPLPL+HRH+  AS QLQ A KLLDSGAVRATRFLWRYPIAR+                  RLQEQA+   A+EVA
Sbjct:  582 KAAAEFQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLEPLPLYHRHMATASTQLQNAVKLLDSGAVRATRFLWRYPIARMFLLFYLVFVHLFLMYLIHRLQEQAE---AQEVA 698
[Close]
BLAST of EY664990 vs. ExPASy Swiss-Prot
Match: GOGA5_ORYSJ (Golgin-84 OS=Oryza sativa subsp. japonica GN=Os01g0744400 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.951e-19
Identity = 58/132 (43.94%), Postives = 71/132 (53.79%), Query Frame = 1 
Query:   61 RAAAEFQLEKETNRLQXXXXXXXXXXXXXXXXXXXXXXXXMKSLEPLPLHHRHIVGASVQLQKAAKLLDSGAVRATRFLWRYPIARIIXXXXXXXXXXXXXXXXXRLQEQADNFAAREVAESM-GLTTSNLP 453
            +AA EFQLEK   +                          +K+LEPLPLHHRH+  A+ QLQKAAKLLDSGAVRATRFLWR+P+AR+                  RLQ+    FA+RE   +M GL  S+LP
Sbjct:  582 KAALEFQLEKSIKQFHEVQMEAERSRVARRSASAWEEDADIKALEPLPLHHRHMATANQQLQKAAKLLDSGAVRATRFLWRHPVARVSLLFYLVFVHLFLMYLMHRLQD----FASREGPTAMGGLANSDLP 709
The following BLAST results are available for this feature:
BLAST of EY664990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GOGC1_ARATH2.416e-2049.17Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 ... [more]
GOGA5_ORYSJ5.951e-1943.94Golgin-84 OS=Oryza sativa subsp. japonica GN=Os01g... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-072-G07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664990 ID=EY664990; Name=EY664990; organism=Citrus sinensis; type=EST; length=928bp
GACTAGCTGGTGCGTACCCCAGNCTCCGGTGCCGGNATTAAACCCCTCGA
CCCACGCGTCCGGGCTGCTGCAGAATTTCAGTTGGAGAAGGAAACGAATC
GTCTTCAAGAAGTACAGTCAGAGGCAGAGAGAAGTAGAGTTTCTCGTCGA
TCATGGTCATCTTGGGAAGAAGATGCTGAAATGAAGAGTCTTGAGCCTCT
CCCATTGCATCATCGTCACATTGTTGGGGCAAGTGTGCAGCTGCAAAAGG
CAGCAAAACTTCTGGATTCAGGGGCTGTAAGGGCCACACGATTTCTTTGG
CGCTACCCAATAGCACGAATCATTTTGCTTTTCTACCTTGTATTTGTACA
TCTCTTCTTGATGTATTTGTTGCACCGTCTTCAGGAACAAGCAGATAATT
TTGCTGCAAGAGAAGTTGCTGAATCTATGGGTCTCACCACCTCTAACTTA
CCATGATTGGGCGGCTCCTCAGGGTGCTGTAGCTTTCTGAATGATTGATT
TGGTGTCTGCAAGGGCATGTGTTCAAGTTTTCAACAAACACATACGGCTT
AAAAAATGCTTTCAAATTGTAAAAATTACAGAAGATGAAAACCTATTTAC
AGTCCTCATTATATCAGAATCCCCAGAGGAAATAGTCAATCCTGGGGAAA
CTGATGCGGCTGAGAAATAGTCAACTGAATTCAGGTGACGGTACAAATTC
AGTTGTATGGCTTATCTAGGAGCTCAATGCCAATGCCCATATGCTGNTTA
TTAACATTTTCTGGTGATTAGTTTGATCTTTTTTTTTCCCTTTTTTTTTT
TTTTTTTGATTTTGGGGTCACTGAAATGACCACTGAAAATGAGACTACTC
CCAAAAATATTGTAAAATTGTAGACCCTTATACTTTGAATAATCATGAAT
GGAATATTCTTTTATTTAAAAAAAAAAA
back to top