EY720618

Overview
NameEY720618
Unique NameEY720618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6342 contig Csv1_Contig6342:1..436. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720618 vs. ExPASy Swiss-Prot
Match: MGP_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.424e-32
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 2
Query:  137 PPPAKRKRNLPGNPDPTAEVIALSPXSLMATNRFLCEICNXGFKRDQNLQLHRRGHNLPWKLRARS 334
            PP  K+KRNLPGNPDP AEVIALSP +LMATNRFLCEIC  GF+RDQNLQLHRRGHNLPWKL+ R+
Sbjct:   37 PPLVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRT 102          

HSP 2 Score: 32.7278 bits (73), Expect = 1.424e-32
Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:  328 KITTEIRKRVYVWPEPSCVH 387
            + + E+RKRVYV PE SCVH
Sbjct:  101 RTSKEVRKRVYVCPEKSCVH 120          

HSP 3 Score: 27.7202 bits (60), Expect = 1.424e-32
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  387 HKPARALGDLTGIR 428
            H P RALGDLTGI+
Sbjct:  121 HHPTRALGDLTGIK 134          
BLAST of EY720618 vs. ExPASy Swiss-Prot
Match: NUC_ARATH (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.162e-27
Identity = 59/100 (59.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:  137 PPPAKRKRNLPGNPDPTAEVIALSPXSLMATNRFLCEICNXGFKRDQNLQLHRRGHNLPWKLRARSPLR-SEREFTSGQNPHVFTQTGSCTG*SDGHQKH 433
            PP  K+KRNLPGNPDP AEVIALSP +LMATNRFLCE+C  GF+RDQNLQLHRRGHNLPWKL+ R+     +R +   +   V   +    G   G +KH
Sbjct:   33 PPLVKKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKH 132          
BLAST of EY720618 vs. ExPASy Swiss-Prot
Match: JKD_ARATH (Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.354e-27
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 2
Query:  146 AKRKRNLPGNPDPTAEVIALSPXSLMATNRFLCEICNXGFKRDQNLQLHRRGHNLPWKLRARS 334
            AK+KRN PG PDP A+VIALSP +LMATNRF+CEICN GF+RDQNLQLHRRGHNLPWKL+ RS
Sbjct:   52 AKKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRS 114          

HSP 2 Score: 25.0238 bits (53), Expect = 2.354e-27
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  387 HKPARALGDLTGIR 428
            H  +RALGDLTGI+
Sbjct:  134 HDASRALGDLTGIK 147          

HSP 3 Score: 23.8682 bits (50), Expect = 2.354e-27
Identity = 8/15 (53.33%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  343 IRKRVYVWPEPSCVH 387
            I+K+VY+ P  +CVH
Sbjct:  119 IKKKVYICPIKTCVH 133          
The following BLAST results are available for this feature:
BLAST of EY720618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MGP_ARATH1.424e-3281.82Zinc finger protein MAGPIE OS=Arabidopsis thaliana... [more]
NUC_ARATH2.162e-2759.00Zinc finger protein NUTCRACKER OS=Arabidopsis thal... [more]
JKD_ARATH2.354e-2780.95Zinc finger protein JACKDAW OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-012-A09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720618 ID=EY720618; Name=EY720618; organism=Citrus sinensis; type=EST; length=434bp
AGAAGAAGTTCATCAACAACAAGAACAACAACAAGGGCTAGTGAGTCAGT
TTCTTGTTACAAATTCTTTGGCTTCAAGTACTACCACGGCAACTAATAAC
AGCAGCAGCAATGGCTCTAGTAGTACTACTCAGCCTCCTCCACCAGCTAA
AAGAAAAAGAAATTTACCAGGAAATCCAGACCCAACAGCTGAAGTTATCG
CTCTCTCACCANACTCACTCATGGCAACAAACCGTTTCCTCTGTGAAATC
TGCAACANGGGATTCAAAAGGGACCAAAACTTGCAGCTGCATCGACGAGG
CCACAACCTGCCATGGAAGCTGAGGGCAAGATCACCACTGAGATCAGAAA
GAGAGTTTACGTCTGGCCAGAACCCTCATGTGTTCACACAAACCGGCTCG
TGCACTGGGTGATCTGACGGGCATCAGAAGCACT
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