EY720612

Overview
NameEY720612
Unique NameEY720612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY720612_ssr173 microsatellite EY720612_ssr173:173..190. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY720612 vs. ExPASy Swiss-Prot
Match: RFS6_ARATH (Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 4.864e-55
Identity = 102/158 (64.56%), Postives = 131/158 (82.91%), Query Frame = 1
Query:  199 MTIKPVVRIAERKLIVKDRTILTGVPDNLITTSGSTSGPVEGVFIGAAFDEESSRHVLPIGALRDIRFLACXRFKLWWMAQKMGDHGSEIPLETQFLWVETKEGSHIESN--DGYEDDQIVYTVFLPLIEGSFRACLQGDGGDELEWWLDGGESDAKR 666
            MTIKP VRI++  LI+K+RTILTGVPDN+ITTS S +GPVEGVF+GA F++E S+H++PIG LR+ RF++C RFKLWWMAQ+MG+ G +IP ETQFL VE+ +GSH+ES+  +G E +Q VYTVFLPLIEGSFR+CLQG+  DE+E  L+ G+ D KR
Sbjct:    1 MTIKPAVRISDGNLIIKNRTILTGVPDNVITTSASEAGPVEGVFVGAVFNKEESKHIVPIGTLRNSRFMSCFRFKLWWMAQRMGEMGRDIPYETQFLLVESNDGSHLESDGANGVECNQKVYTVFLPLIEGSFRSCLQGNVNDEVELCLESGDVDTKR 158          
BLAST of EY720612 vs. ExPASy Swiss-Prot
Match: RFS2_ARATH (Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 5.056e-36
Identity = 76/162 (46.91%), Postives = 105/162 (64.81%), Query Frame = 1
Query:  199 MTIKPVVRIAERKLIVKDRTILTGVPDNLITTSGSTSGPVEGVFIGAAFDEESSRHVLPIGALRDIRFLACXRFKLWWMAQKMGDHGSEIPLETQFLWVETKEGSHIESNDGYEDDQIVYTVFLPLIEGSFRACLQGDGGDELEWWLDGGESDAKRGRGVTL 684
            MTI   + +    L+V+ +TILT +PDN+I T  + +G V G FIGA F++  S HV PIG L  +RF+ C RFKLWWM Q+MG  G +IPLETQF+ +E+K+   +E N   +D   VYTVFLPL+EG FRA LQG+  +E+E   + G+   +  +G  L
Sbjct:    1 MTITSNISVQNDNLVVQGKTILTKIPDNIILTPVTGNGFVSGSFIGATFEQSKSLHVFPIGVLEGLRFMCCFRFKLWWMTQRMGSCGKDIPLETQFMLLESKD--EVEGNG--DDAPTVYTVFLPLLEGQFRAVLQGNEKNEIEICFESGDKAVETSQGTHL 158          
BLAST of EY720612 vs. ExPASy Swiss-Prot
Match: RFS1_ARATH (Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.198e-31
Identity = 67/159 (42.14%), Postives = 94/159 (59.12%), Query Frame = 1
Query:  199 MTIKPVVRIAERKLIVKDRTILTGVPDNLITTSGSTSGPVEGVFIGAAFDEESSRHVLPIGALRDIRFLACXRFKLWWMAQKMGDHGSEIPLETQFLWVETKEGSHIESNDGYEDDQIVYTVFLPLIEGSFRACLQGDGGDELEWWLDGGESDAKRGRG 675
            MT+   + + +  L+V    +L GVP+N++ T  S +  ++G FIG   D+  S  V  +G L D+RF+   RFKLWWM Q+MG +G EIP ETQFL VE  +GS +    G  D    Y VFLP++EG FRA LQG+  +ELE  L+ G+    +  G
Sbjct:    1 MTVGAGISVTDSDLVVLGHRVLHGVPENVLVTPASGNALIDGAFIGVTSDQTGSHRVFSLGKLEDLRFMCVFRFKLWWMTQRMGTNGKEIPCETQFLIVEANQGSDL----GGRDQSSSYVVFLPILEGDFRAVLQGNEANELEICLESGDPTVDQFEG 155          
BLAST of EY720612 vs. ExPASy Swiss-Prot
Match: RFS_ORYSJ (Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 52/159 (32.70%), Postives = 75/159 (47.17%), Query Frame = 1
Query:  211 PVVRIAERKLIVKDRTILTGVPDNLITTSGSTSGP-------VEGVFIGAAFDEESSRHVLPIGALRDIRFLACXRFKLWWMAQKMGDHGSEIPLETQFLWVETKEGSHIESNDGYEDDQIVYTVFLPLIEGSFRACLQ-GDGGDELEWWLDGGESDAK 663
            P   +  + L V     L  VP N+  T  ST  P         G F+G        RHV+PIG LRD RF++  RFK+WW    +G +G ++  ETQ + ++  +     S  G       Y + LP++EG FRACL+ G   D +   L+ G S  +
Sbjct:   26 PRFTLKGKDLAVDGHPFLLDVPANIRLTPASTLVPNSDVPAAAAGSFLGFDAPAAKDRHVVPIGKLRDTRFMSIFRFKVWWTTHWVGTNGRDVENETQMMILD--QSGTKSSPTGPRP----YVLLLPIVEGPFRACLESGKAEDYVHMVLESGSSTVR 178          
BLAST of EY720612 vs. ExPASy Swiss-Prot
Match: RFS5_ARATH (Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 52/155 (33.55%), Postives = 82/155 (52.90%), Query Frame = 1
Query:  220 RIAERKLIVKDRTILTGVPDNLITTSGSTSGPVEGV--------FIGAAFD-EESSRHVLPIGALRDIRFLACXRFKLWWMAQKMGDHGSEIPLETQFLWVETKEGSHIESNDGYEDDQIVYTVFLPLIEGSFRACLQGDGGDELEWWLDGGESD 657
            R+ +  L+   + +LT VP N+  TS       +GV        FIG   D E  S HV  IG L++IRF++  RFK+WW    +G +G +I  ETQ + ++ + GS  +S  G    +  Y + LPL+EGSFR+  Q    D++   ++ G ++
Sbjct:   23 RLEDSTLLANGQVVLTDVPVNVTLTSSPYLVDKDGVPLDVSAGSFIGFNLDGEPKSHHVASIGKLKNIRFMSIFRFKVWWTTHWVGSNGRDIENETQIIILD-QSGS--DSGPGSGSGR-PYVLLLPLLEGSFRSSFQSGEDDDVAVCVESGSTE 173          
BLAST of EY720612 vs. ExPASy Swiss-Prot
Match: RFS_PEA (Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-13
Identity = 48/160 (30.00%), Postives = 73/160 (45.62%), Query Frame = 1
Query:  232 RKLIVKDRTILTGVPDNLITTSGSTSGPV-------------------EGVFIGAAFDEESSRHVLPIGALRDIRFLACXRFKLWWMAQKMGDHGSEIPLETQFLWVETKEGSHIESNDGYEDDQIVYTVFLPLIEGSFRACLQGDGGDELEWWLDGGES 654
            R  +V     LT VP N+ TT+ ST  P                    +G F+G    E  S HV+P+G L+ I+F +  RFK+WW    +G +G E+  ETQ L ++     +I            Y + LP++E SFR  LQ    D ++  ++ G +
Sbjct:   35 RNFLVNGHPFLTQVPPNITTTTTSTPSPFLDFKSNKDTIANNNNTLQQQGCFVGFNTTEAKSHHVVPLGKLKGIKFTSIFRFKVWWTTHWVGTNGHELQHETQILILD----KNISLGR-------PYVLLLPILENSFRTSLQPGLNDYVDMSVESGST 183          
The following BLAST results are available for this feature:
BLAST of EY720612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RFS6_ARATH4.864e-5564.56Probable galactinol--sucrose galactosyltransferase... [more]
RFS2_ARATH5.056e-3646.91Probable galactinol--sucrose galactosyltransferase... [more]
RFS1_ARATH2.198e-3142.14Probable galactinol--sucrose galactosyltransferase... [more]
RFS_ORYSJ1.432e-1432.70Galactinol--sucrose galactosyltransferase OS=Oryza... [more]
RFS5_ARATH1.432e-1433.55Probable galactinol--sucrose galactosyltransferase... [more]
RFS_PEA4.605e-1330.00Galactinol--sucrose galactosyltransferase OS=Pisum... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-011-H11-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720612 ID=EY720612; Name=EY720612; organism=Citrus sinensis; type=EST; length=755bp
CCACGCGTGCGCGTTCACATCGTGCTCTCTTAACAGCATCTCATTCTCAA
GCTCAAAATCAAAACTCGTCGTTTTAACCAAGAAGCATTCTGATTCTGAT
ATTCTTCCAATCCTTCATTCTCGGTATTCACTTTTAAGAGAGACGAGCTA
ATTACACCTCGAAAGAAGCTTCAAGAAGAAGAAGAAGAAGTTAAAGAGAT
GACGATCAAACCAGTAGTTAGGATCGCCGAGAGGAAGCTAATTGTAAAGG
ATCGTACGATCCTTACCGGAGTGCCGGACAATTTGATCACGACGTCCGGT
TCGACTTCCGGTCCCGTCGAGGGAGTCTTCATTGGCGCGGCTTTCGATGA
AGAAAGCAGCAGGCACGTGCTCCCCATCGGGGCTTTGCGTGACATTCGTT
TCTTGGCCTGTNTCAGGTTCAAGTTGTGGTGGATGGCTCAGAAAATGGGC
GACCATGGCAGTGAAATCCCACTCGAGACTCAGTTCTTATGGGTGGAAAC
CAAAGAGGGGTCCCACATCGAATCGAACGATGGATACGAAGACGATCAGA
TCGTCTACACTGTGTTCCTCCCTCTGATTGAAGGCTCATTCCGCGCGTGT
TTGCAAGGAGATGGCGGCGACGAGCTCGAGTGGTGGTTAGATGGGGGGGA
GTCCGACGCGAAGCGTGGTCGTGGAGTGACCCTTTGTGCGCGGCGGCCTG
GGGGGATCGTGGGGGGGGGGTCGTGGAGGGTGGGGGGCGGGTGGTGTGGT
CTCGG
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