CX053788

Overview
NameCX053788
Unique NameCX053788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX053788 vs. ExPASy Swiss-Prot
Match: SELT_ARATH (SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 2.487e-28
Identity = 58/72 (80.56%), Postives = 67/72 (93.06%), Query Frame = -1 
Query:  261 PMLGMTPPP-WYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVA 473
            PM+G+  PP WY+SLRANRFGS+ASTWL+GNFLQSFLQSSGAFEV CN +LVFSKLKEGRFPGEIEL+DL++
Sbjct:  126 PMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVSCNGELVFSKLKEGRFPGEIELRDLIS 197
The following BLAST results are available for this feature:
BLAST of CX053788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SELT_ARATH2.487e-2880.56SelT-like protein OS=Arabidopsis thaliana GN=At3g4... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_8B12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-8B12-C23-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053788 ID=CX053788; Name=CX053788; organism=Citrus sinensis; type=EST; length=473bp
TTTTTTTTTTTTAAGGGCTTAAAATCAGAAATTTCAATCCTGCTGGGAAA
GTAATAGTTGTCGACATGTTTTACAGAGCCAATGTTCATTATGATAGTGG
CATCAAAATCTGTTTATATATTTGCCATAACAACCTAGATAATGAAATCT
TGTACAAGGCTCTCAGTCAATCCTTTGATTCCAACCCTCAATGTCCAGTG
AATGAACTAGGACCATACACTTCCAACACCATCCACAAGTCTTGATGAAG
CCAATTGTTTGGCAACAAGATCTTTTAGCTCAATCTCGCCTGGAAACCTC
CCCTCCTTCAGTTTAGAGAAGACCAAGTCATCATTACAGTAAACTTCAAA
AGCCCCAGAGCTTTGGAGGAAGGACTGCAAAAAGTTTCCAATAAGCCAGG
TAGATGCTATGGACCCAAACCTATTGGCACGCAGCGAATAATACCATGGA
GGTGGTGTCATTCCCAGCATCGG
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