EY664943

Overview
NameEY664943
Unique NameEY664943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY664943 vs. ExPASy Swiss-Prot
Match: LHY_ARATH (Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.699e-29
Identity = 86/205 (41.95%), Postives = 110/205 (53.66%), Query Frame = 1 
Query:   19 VDRSSCGSNTPSSSEVETDALXXXXXXXXXXXXIDPSLP-ATDPGNRRIISSSN------ITDSWKEVSEVGRLAFQALFSREVLPQSFSPPH--DLKDKMQQDNVEXXXXXXXXXXXXSLFDLNSKTWGSCFGHQDVEKSTVSGVENNGGEGLLTIGLGHGK-LKARRTGFKPYKRCSVEAKENRILNTGNQAEDECPKMIRVE 603
            VDRSSCGSNTPS S+ ETDAL             D + P   +  NR+I    N       TDSWKEVSE GR+AFQALF+RE LPQSFSPP   +  ++ Q D                    N K+  SC   Q               EG++ IG+G  K LK R+TGFKPYKRCS+E KE+++ N  NQ++++  K +R+E
Sbjct:  464 VDRSSCGSNTPSGSDAETDALDKMEKDKEDVKETDENQPDVIELNNRKIKMRDNNSNNNATTDSWKEVSEEGRIAFQALFARERLPQSFSPPQVAENVNRKQSDTSMPLAP-------------NFKSQDSCAADQ---------------EGVVMIGVGTCKSLKTRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLE 640
[Close]
BLAST of EY664943 vs. ExPASy Swiss-Prot
Match: CCA1_ARATH (Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.699e-29
Identity = 92/205 (44.88%), Postives = 110/205 (53.66%), Query Frame = 1 
Query:   13 KQVDRSSCGSNTPSSSE-VETDALXXXXXXXXXXXXI---DPSLPATDPGN-RRIISSSNITDSWKEVSEVGRLAFQALFSREVLPQSFSPPHDLKDKMQQDNVEXXXXXXXXXXXXSLFDLNSKTWGSCFGHQDVEKSTVSGVENNGGEGLLTIGLGHGKLKAR-RTGFKPYKRCSVEAKENRILNTGN--QAEDECPKMIRVE 603
            KQVDRSSCGSNTPSSS+ VE DA                 D + P T   N RR   SSNITD WK VS+ GR+AFQALFSREVLPQSF+   + +++ QQ   +               DLN             + + V   E     G L IGL   KL +R RTGFKPYKRCS+EAKE+RILN       E + PK +R+E
Sbjct:  418 KQVDRSSCGSNTPSSSDDVEADASERQEDGTNGEVKETNEDTNKPQTSESNARRSRISSNITDPWKSVSDEGRIAFQALFSREVLPQSFTYREEHREEEQQQQEQ---------RYPMALDLNF----------TAQLTPVDDQEEKRNTGFLGIGLDASKLMSRGRTGFKPYKRCSMEAKESRILNNNPIIHVEQKDPKRMRLE 603
The following BLAST results are available for this feature:
BLAST of EY664943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LHY_ARATH3.699e-2941.95Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV... [more]
CCA1_ARATH3.699e-2944.88Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-072-C03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664943 ID=EY664943; Name=EY664943; organism=Citrus sinensis; type=EST; length=926bp
AACAAAAATTATAAGCAGGTAGACCGTTCATCATGCGGTTCCAATACACC
TTCTAGCAGTGAAGTTGAAACTGATGCATTAGAAAAGCAAGAGAAAGGCA
AAGAGGAGTCTAAAGAAATTGATCCGAGTCTTCCTGCCACCGATCCTGGT
AACCGTCGTATTATAAGCAGCAGTAACATTACCGATTCTTGGAAGGAAGT
TTCTGAAGTGGGGCGGCTGGCTTTTCAAGCACTCTTCTCTAGAGAGGTAT
TGCCTCAAAGCTTTTCACCTCCACATGATCTGAAGGACAAAATGCAGCAG
GACAATGTAGAGGATAAGCAAAACGGCAATAAGAAAGATGGAGATAAATC
ACTTTTCGATCTCAACAGCAAGACATGGGGTTCTTGTTTCGGCCATCAAG
ATGTGGAGAAAAGCACGGTGTCCGGAGTCGAGAACAATGGGGGGGAGGGG
CTGCTGACAATCGGGCTTGGGCATGGTAAACTGAAGGCCCGTCGAACTGG
TTTTAAACCTTACAAAAGGTGTTCTGTGGAGGCCAAAGAAAACAGAATAC
TCAACACCGGCAACCAAGCCGAAGATGAATGCCCCAAGATGATACGCGTG
GAATGAGCAACAACTNGACATTGGTTATTGCATGCAGTTAAGCAAGGGAA
TACTTTGTTAATTTGCATGGATTTCTAATTTTCCCCACCTATTTCGTATG
TTTATTATGAGGTCTATTTCACGACTCTTCGTGTAGTTGGGTGTTGTACT
ATATTATACGTCGACATTGACTTATTTGCCTTTCTGAACTTATGCACTGC
ACTTATTNCATTTTCATAGACGACTGGGCAAAATNATCCAGTTTTGAACA
GCCCGGATCTGGCCTTGCGCGCAAAAGATGTTTCTAAATTAAAAAAAAAA
AAAAAAAAAAAAAAGNCGGCCGTCTA
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