EY664937

Overview
NameEY664937
Unique NameEY664937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664937_ssr595 microsatellite EY664937_ssr595:595..606. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4882 contig Csv1_Contig4882:1111..1748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664937 vs. ExPASy Swiss-Prot
Match: APMAP_RAT (Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 48/183 (26.23%), Postives = 70/183 (38.25%), Query Frame = 2
Query:    2 YFISIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXXTLNILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGK--------------IESNKKTAFCEETAKPWFLRDPVGVKFXXXXXXXXXXXXXXXXTLNSVSEVQEYGGYLYTGSSVQPYV 508
            Y + +  G   GRLL+YD + K V V+ + L FPNGV                  I R ++ G            MP FPDNI+  S G +W+A  + R                I+      F +ET   +  R  + ++                  +  VSE  E+ GYLY GS   P++
Sbjct:  186 YLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIFKLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFI 368          
BLAST of EY664937 vs. ExPASy Swiss-Prot
Match: APMAP_BOVIN (Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 47/183 (25.68%), Postives = 73/183 (39.89%), Query Frame = 2
Query:    2 YFISIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXXTLNILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGK--------------IESNKKTAFCEETAKPWFLRDPVGVKFXXXXXXXXXXXXXXXXTLNSVSEVQEYGGYLYTGSSVQPYV 508
            Y + +  G   GRLL+YD   K V V+ + L FPNGV                + I RF++ G            +P FPDNI++ S G +W++M + R                ++      F +ET   +  R  + ++                  +  VSE  E+ G+LY GS   PY+
Sbjct:  225 YLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPGFSMLDFLSERPFLKKVIFKLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLGSFRAPYL 407          
BLAST of EY664937 vs. ExPASy Swiss-Prot
Match: STS3_ARATH (Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 57/174 (32.76%), Postives = 77/174 (44.25%), Query Frame = 2
Query:   11 SIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXXTLNILRFWLQGERTTYTPQLFAEMPRFPDNIKS-DSKGEFWIA--MNSARGKIE-SNKKTAFCEETAKPWFLRDPVGVKFXXXXXXXXXXXXXXXXTLNSVSEVQEYGGYLYTGSSVQPYVVVIK 520
            ++AT D +G+  KYDP KK VTV+  GLS   G                  NI R+W++G +   T + F      PDNIK   S G FW+A  +NSA G    S  K +   +  +   L+D  G                   TL  VSEV EY G LY G+   P+  ++K
Sbjct:  176 AVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKSNIKRYWIKGSKAG-TSEDFTNSVSNPDNIKRIGSTGNFWVASVVNSATGPTNPSAVKVSSAGKVLQTIPLKDKFG------------------DTL--VSEVNEYKGQLYIGALFGPFAGILK 328          
BLAST of EY664937 vs. ExPASy Swiss-Prot
Match: APMAP_CHICK (Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 50/186 (26.88%), Postives = 68/186 (36.56%), Query Frame = 2
Query:    2 YFISIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXXTLNILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLR-----------------DPVGVKFXXXXXXXXXXXXXXXXTLNSVSEVQEYGGYLYTGSSVQPYV 508
            +   +  G   GRLL+YD + K V V+  GL FPNGV                  I R+++ G            MP  PDNI+  S G +W+AM   R     +      E   KPW  R                   + V+                 T+  VSE  E+ GYLY GS   P++
Sbjct:  225 FLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSMLDFLSE---KPWIKRMIFKLLSQETVTKLLPKRSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFI 407          
BLAST of EY664937 vs. ExPASy Swiss-Prot
Match: APMAP_MOUSE (Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 47/183 (25.68%), Postives = 69/183 (37.70%), Query Frame = 2
Query:    2 YFISIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXXTLNILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGK--------------IESNKKTAFCEETAKPWFLRDPVGVKFXXXXXXXXXXXXXXXXTLNSVSEVQEYGGYLYTGSSVQPYV 508
            Y + +      GRLL+YD + K V V+ + L FPNGV                  I R ++ G            MP FPDNI+  S G +W+A  + R                I+      F +ET   +  R  + ++                  +  VSE  E+ GYLY GS   P++
Sbjct:  225 YLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIFKMFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFI 407          
The following BLAST results are available for this feature:
BLAST of EY664937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
APMAP_RAT1.860e-1126.23Adipocyte plasma membrane-associated protein OS=Ra... [more]
APMAP_BOVIN1.860e-1125.68Adipocyte plasma membrane-associated protein OS=Bo... [more]
STS3_ARATH2.429e-1132.76Strictosidine synthase 3 OS=Arabidopsis thaliana G... [more]
APMAP_CHICK7.068e-1126.88Adipocyte plasma membrane-associated protein OS=Ga... [more]
APMAP_MOUSE9.231e-1125.68Adipocyte plasma membrane-associated protein OS=Mu... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-072-B09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664937 ID=EY664937; Name=EY664937; organism=Citrus sinensis; type=EST; length=639bp
ATATTTTATTTCGATTGCTACCGGAGATAGAAGCGGGAGGTTATTGAAAT
ATGATCCACTCAAGAAGAACGTGACAGTAATGTATAACGGCTTATCATTT
CCGAATGGTGTTGCACTAAGCAATAATAACTCGTTCCTCCTACTTGCTGA
GTCAGCCACACTGAATATTTTACGGTTTTGGCTTCAAGGTGAAAGAACTA
CATACACTCCGCAGCTTTTTGCTGAGATGCCGAGATTTCCTGACAACATC
AAGAGTGACAGCAAGGGAGAATTTTGGATTGCAATGAACTCTGCGAGGGG
AAAGATTGAAAGCAATAAGAAGACGGCTTTCTGTGAAGAAACTGCGAAGC
CATGGTTTCTAAGAGACCCTGTTGGGGTTAAGTTTGATGTGAATGGTAAT
GTTGTGGATGTGTTGGATGGAAACGAAGGAAATACACTCAATTCTGTCAG
TGAAGTTCAAGAATACGGTGGATATTTGTACACGGGATCTTCTGTGCAGC
CTTATGTTGTCGTAATAAAGGCCTAGTCTAGTCTTTGCTATTTCCTCAGA
AGATTTTCTGTCTTGCCATCCCCTCTTGTTTGGTTAAAAACACAAATTAA
TTAATTAGTAAGCAAACTCTAAATAAAAAAAAAAAAAAA
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