CX047189

Overview
NameCX047189
Unique NameCX047189
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7831 contig Csv1_Contig7831:364..1003. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047189 vs. ExPASy Swiss-Prot
Match: U4972_POPTR (UPF0497 membrane protein 2 OS=Populus trichocarpa GN=POPTRDRAFT_822486 PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 9.824e-61
Identity = 112/143 (78.32%), Postives = 128/143 (89.51%), Query Frame = 1
Query:    1 ASSIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRVACFIINGSRFHL 429
            AS++FMLTNSRGS+S  WY++DAFR+VFAANAIVAIYSLFEM  SVWEISR AT FPE+ QVWFDFGHDQVFAYLLLSA++AGTELARTLK  DTCT   AFC+QSDI++ LGFAGFLF+G+SSL SGFRV CFIINGSRF++
Sbjct:   46 ASAVFMLTNSRGSDSLHWYNFDAFRYVFAANAIVAIYSLFEMAASVWEISRNATLFPEICQVWFDFGHDQVFAYLLLSANTAGTELARTLK--DTCTDNKAFCVQSDIAIVLGFAGFLFLGISSLFSGFRVVCFIINGSRFYV 186          
BLAST of CX047189 vs. ExPASy Swiss-Prot
Match: U4973_RICCO (UPF0497 membrane protein 3 OS=Ricinus communis GN=RCOM_0464280 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.853e-59
Identity = 111/143 (77.62%), Postives = 125/143 (87.41%), Query Frame = 1
Query:    1 ASSIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRVACFIINGSRFHL 429
            ASS+FMLTN      P WY +DAFR+VFAANAIVAIYSLFEM  SVWEISRG T FPE+LQVWFDFGHDQVFAYLLLSADSA T LA+TLKG DTC A+NAFC+QS I++ALGFAGFLF+G+SSLLSGFRV CF+INGSRF++
Sbjct:   56 ASSVFMLTN------PTWYHFDAFRYVFAANAIVAIYSLFEMAASVWEISRGNTLFPEILQVWFDFGHDQVFAYLLLSADSAATALAKTLKGGDTCAASNAFCVQSYIAIALGFAGFLFLGLSSLLSGFRVVCFLINGSRFYV 192          
BLAST of CX047189 vs. ExPASy Swiss-Prot
Match: U497C_POPTR (UPF0497 membrane protein 12 OS=Populus trichocarpa GN=POPTRDRAFT_820327 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.960e-58
Identity = 107/143 (74.83%), Postives = 125/143 (87.41%), Query Frame = 1
Query:    1 ASSIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRVACFIINGSRFHL 429
            AS++FMLTNSRGS+S  WY++DAFR+VFAANAIVA+YSLFEM  +VWEISR AT FPEV QVWFDFGHDQVFAYLLLSA+S G+E+ART+K  D CT    FC+QSDI++ALGF GFLF+GVSSL SGFRV CFIINGSRF++
Sbjct:   46 ASAVFMLTNSRGSDSFHWYNFDAFRYVFAANAIVAVYSLFEMTAAVWEISRNATLFPEVCQVWFDFGHDQVFAYLLLSANSTGSEMARTMK--DACTDNKPFCVQSDIAIALGFVGFLFLGVSSLFSGFRVVCFIINGSRFYV 186          
BLAST of CX047189 vs. ExPASy Swiss-Prot
Match: U497M_ARATH (UPF0497 membrane protein At3g55390 OS=Arabidopsis thaliana GN=At3g55390 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 7.784e-58
Identity = 104/143 (72.73%), Postives = 118/143 (82.52%), Query Frame = 1
Query:    1 ASSIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRVACFIINGSRFHL 429
            AS++FMLTNSRGS SP WYD+DAFRFVF ANAIVA+YS+FEMG  VWE SR  T +PE  QVWFDFGHDQVF+YLLLSA SA   LART++G DTCTA  AFCLQSD+++ LGFA FLF+  SS  SGFRVACF+I GSRFHL
Sbjct:   50 ASAVFMLTNSRGSASPHWYDFDAFRFVFVANAIVALYSVFEMGTCVWEFSRETTLWPEAFQVWFDFGHDQVFSYLLLSAGSAAAALARTMRGGDTCTANKAFCLQSDVAIGLGFAAFLFLAFSSCFSGFRVACFLITGSRFHL 192          
BLAST of CX047189 vs. ExPASy Swiss-Prot
Match: U4977_PHYPA (UPF0497 membrane protein 7 OS=Physcomitrella patens GN=PHYPADRAFT_182225 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.998e-29
Identity = 60/122 (49.18%), Postives = 84/122 (68.85%), Query Frame = 1
Query:   52 WYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDT-------CTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRVA 396
            WYD++ +R+V A NAI+ IYS  E  ++V+   +G+   PE+ QVWFD+GHDQ FAYLL SA+SAG  +A+ L+  +T       CT A  +C Q+ +S+ALGF  FLF+ +SSLL+G RVA
Sbjct:   65 WYDFEPYRYVLAVNAIICIYSFVETWLAVYTYLQGSYLLPEIFQVWFDYGHDQGFAYLLFSANSAGVAMAQLLQSGNTLIHGAYHCTEAGGYCTQARVSIALGFVAFLFLALSSLLTGLRVA 186          
BLAST of CX047189 vs. ExPASy Swiss-Prot
Match: U4979_PHYPA (UPF0497 membrane protein 9 OS=Physcomitrella patens GN=PHYPADRAFT_135270 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.592e-29
Identity = 59/122 (48.36%), Postives = 82/122 (67.21%), Query Frame = 1
Query:   52 WYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDT-------CTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRVA 396
            W+D+D FR+VFA NAI+ +YS  E  ++V+ +SRG    PE  QVWFD+GHDQ FA LL SA+S G  +A+ L+   T       C+ A A+C Q+ +S+A+GF  FLF+ +SS L+G RVA
Sbjct:   73 WHDFDPFRYVFAVNAIICVYSFVETWLAVYTLSRGTLLLPETFQVWFDYGHDQGFACLLFSANSVGIAMAQLLQSGSTLIQGQYYCSDAGAYCTQARVSIAMGFGAFLFLALSSFLTGLRVA 194          
BLAST of CX047189 vs. ExPASy Swiss-Prot
Match: U4978_PHYPA (UPF0497 membrane protein 8 OS=Physcomitrella patens GN=PHYPADRAFT_192523 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.295e-28
Identity = 61/122 (50.00%), Postives = 80/122 (65.57%), Query Frame = 1
Query:   52 WYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLK-------GTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRVA 396
            WYD+D FR+V A NAI+ IYS  E+ ++V+   +   F PE  QVWFD+GHDQ FAYLL SA+SAG  +A+ L+       G   C+ A  FC Q+  S+ LGF  FLF+ +SSLL+G RVA
Sbjct:   65 WYDFDPFRYVLAVNAIICIYSFVEIWLAVYTYLKDTLFLPETFQVWFDYGHDQGFAYLLFSANSAGIAMAQLLQSGNSLIHGAYRCSDAGVFCTQARASIGLGFGAFLFLALSSLLTGLRVA 186          
BLAST of CX047189 vs. ExPASy Swiss-Prot
Match: U497D_PHYPA (UPF0497 membrane protein 13 OS=Physcomitrella patens GN=PHYPADRAFT_161913 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.101e-11
Identity = 41/148 (27.70%), Postives = 79/148 (53.38%), Query Frame = 1
Query:    7 SIFMLTNSRGS--------NSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEV-LQVWFDFGHDQVFAYLLLSADSAGTELARTL----KGTDTCTA--ANAFCLQSDISVALGFAGFLFIGVSSLLSGFRVACFI 405
            +I ++ ++RGS         + ++  + A+R++ A N IV +YS F+    ++ +  G +F P + +  W  FG DQ+F YLLLSA ++   +A        G   C+     +FC ++D++V + F   L +  S++L+ +R+A  +
Sbjct:  223 AIVVMCSTRGSMRTDGVDFGTLKFNHFQAYRYLVAVNVIVFVYSTFQFIQLLYTVILGISFIPSIFISTWMTFGFDQLFLYLLLSASTSAATVANMSYTGEMGIQLCSRFDVGSFCSKADVAVTMSFFAVLAMLSSTILAIYRIAVLL 370          
The following BLAST results are available for this feature:
BLAST of CX047189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
U4972_POPTR9.824e-6178.32UPF0497 membrane protein 2 OS=Populus trichocarpa ... [more]
U4973_RICCO1.853e-5977.62UPF0497 membrane protein 3 OS=Ricinus communis GN=... [more]
U497C_POPTR5.960e-5874.83UPF0497 membrane protein 12 OS=Populus trichocarpa... [more]
U497M_ARATH7.784e-5872.73UPF0497 membrane protein At3g55390 OS=Arabidopsis ... [more]
U4977_PHYPA1.998e-2949.18UPF0497 membrane protein 7 OS=Physcomitrella paten... [more]
U4979_PHYPA7.592e-2948.36UPF0497 membrane protein 9 OS=Physcomitrella paten... [more]
U4978_PHYPA1.295e-2850.00UPF0497 membrane protein 8 OS=Physcomitrella paten... [more]
U497D_PHYPA1.101e-1127.70UPF0497 membrane protein 13 OS=Physcomitrella pate... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_12F10_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F10-K19-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047189 ID=CX047189; Name=CX047189; organism=Citrus sinensis; type=EST; length=640bp
GCTTCTTCCATTTTCATGCTAACTAACTCCCGTGGCTCCAACTCCCCTCG
TTGGTACGATTATGATGCTTTCAGATTTGTTTTCGCTGCAAATGCAATAG
TGGCCATTTACTCTCTTTTCGAAATGGGCGTCTCCGTTTGGGAAATCTCC
AGAGGAGCCACGTTTTTCCCCGAAGTTTTGCAAGTTTGGTTCGATTTTGG
CCACGATCAGGTTTTCGCATACCTGTTGCTGTCGGCGGACTCGGCGGGGA
CAGAGCTGGCGAGGACACTGAAGGGAACGGACACGTGTACGGCCGCAAAT
GCGTTTTGCCTACAGTCCGATATATCAGTGGCGTTGGGATTCGCCGGGTT
TTTGTTTATCGGGGTTTCGTCTTTGTTGTCGGGGTTTCGAGTGGCCTGTT
TTATAATCAACGGCTCTCGTTTTCATCTTTAATAAGGGAATGTTTGGGAT
GCGTGAAGGCGCAGGATTTGGACTGTGTACCGTACGTTGATTGATTTGGA
CTCGTCCGTTGTGTTGTGCCTTGTGGGTTTTGTAGCTGTTGTTGTGTACT
GGACCGACTGTTGTACATTGAGAGCTGTGTATTCTTTTGTGCAATTGCTG
ACTAATTTTGAATTTATATTACAATAATATTTTTAATTTT
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