EY664910

Overview
NameEY664910
Unique NameEY664910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2024 contig Csv1_Contig2024:617..1281. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY664910 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.216e-12
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 3 
Query:  237 PERAQPPSRPCDLPIARRNSLHRFLEKRKDRIVARAPYQVNGSSGAPDKPADSKSWL 407
            P +  P S  C+LPIARR SLHRFLEKRKDRI ++APYQ++GS+ A  KP  + +WL
Sbjct:  191 PIQPNPASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEASSKPT-NPAWL 246
[Close]
BLAST of EY664910 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 42/115 (36.52%), Postives = 62/115 (53.91%), Query Frame = 3 
Query:   90 YNSFAASLPKSPVE-STPPVSPGPPKIPTEPSCSVPPRSNSIPNFGNNLIPERAQPPSRPC-DLPIARRNSLHRFLEKRKDRIVARAPYQVNGSSGAPDKP--ADSKSWLGLAAQ 422
            +N F+A   K  +  ++   +    K  T+   ++   +N +P+       E  Q    P  +LPIARR SLHRFLEKRKDR+ ++APYQ+   + A   P    + SWLGLAA+
Sbjct:  138 FNDFSAEKAKEVINLASKGTANSLAKNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPYQLCDPAKASSNPQTTGNMSWLGLAAE 252
The following BLAST results are available for this feature:
BLAST of EY664910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TI10B_ARATH5.216e-1259.65Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10A_ARATH7.531e-1136.52Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-H01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664910 ID=EY664910; Name=EY664910; organism=Citrus sinensis; type=EST; length=664bp
CCACGCGTCCGATCATGCAATTAGCAAGCAACGGGAGCTCACTGAGCCAT
GGTACCGCTTATCCTCCTATGCAACTGCCGGCCCAGGGTTACAACTCTTT
TGCTGCTAGTTTACCCAAAAGTCCAGTTGAATCAACTCCCCCGGTTTCTC
CTGGCCCCCCAAAAATTCCAACAGAGCCTAGTTGCTCGGTTCCTCCTCGA
TCAAATAGCATTCCTAACTTTGGCAACAATCTAATTCCAGAACGCGCTCA
ACCTCCCTCGAGACCTTGTGATCTACCAATTGCAAGGAGAAATTCACTCC
ACAGGTTCTTGGAGAAGAGAAAAGACAGGATTGTTGCAAGAGCACCGTAC
CAAGTGAATGGCTCATCAGGGGCTCCAGACAAGCCTGCTGATAGTAAGTC
ATGGCTTGGCCTGGCCGCTCAAACTTCACAGTAGTTTGTGCAAATTGCAT
CCAGTTTTATGGACTGATTATTGGCCGGTCATCGTCTTTTTGGCAAACAT
AAACCTTGCTTTGTTTTTCTTCATCTTCCATCTTCTTTTAGGTTGGGTTT
TGATGAGCCCACCATAGATCTGACGATCATTCTTNCTACCAATAGTTTAT
GTAATTAACTTCTTTATTGAAAATTTAAGTAATGTTATCCCCATGAATAA
AAAAAAAAAAAAAA
back to top