CX047188

Overview
NameCX047188
Unique NameCX047188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.025e-35
Identity = 77/121 (63.64%), Postives = 89/121 (73.55%), Query Frame = -1
Query:  265 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGIAGGEDETAKLQR-GVRQEL 624
            KETPEGH IMLDVPG+KR+E+K+EV ENRVLRVS          GD W RVERS+GKFW QF+LP N DLD V+ KLENGVL L+L KLSP +IKGPRVV IAG + +   L   G +QEL
Sbjct:   72 KETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLTLDKLSPGKIKGPRVVSIAGEDHQQGNLNNDGAKQEL 192          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.961e-34
Identity = 74/120 (61.67%), Postives = 89/120 (74.17%), Query Frame = -1
Query:  265 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGIAGGEDETAKLQRGVRQEL 624
            KET EGH IMLD+PG+K+DE+KIEV EN VLRVS          GDQW RVERS+GKFW QFKLP N D++ V+ KLENGVL ++L KLSP ++KGPRVV IA  ED+TAK+     +EL
Sbjct:   76 KETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTINLTKLSPEKVKGPRVVNIAAEEDQTAKISSSESKEL 195          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.973e-32
Identity = 69/112 (61.61%), Postives = 84/112 (75.00%), Query Frame = -1
Query:  289 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGIAGGEDETAKL 624
            KETPEGH IM+DVPG+K+D++KIEV ENRVLRVS          GD W RVERS+GKFW QFKLP N DLD V+ K+ENGVL L+L KLS  +IKGPR+V I   +D+ +K+
Sbjct:   80 KETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLTLHKLSHDKIKGPRMVSIVEEDDKPSKI 191          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 6.989e-24
Identity = 54/113 (47.79%), Postives = 77/113 (68.14%), Query Frame = -1
Query:  304 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXG----DQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI--AGGED 624
            +ET + H +++DVPG+++++L++EV +NRVLR+S               D W R ERS+G+FW Q +LP N DLD +   L+NGVL +  +KL+P QIKGPRVVGI  AGG+D
Sbjct:   81 RETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTVRFRKLAPDQIKGPRVVGIASAGGDD 193          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.731e-18
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = -1
Query:  319 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI 624
            KETPE H    D+PG+K++E+K+E+ ++RVL++S           DQW RVERS GKF  +F+LP N  +D V+  +ENGVL +++ K    +IK P V  I
Sbjct:   41 KETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPK---EEIKKPEVKSI 139          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  319 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI 624
            KETPE H   +D+PG+K++E+K+EV E+RVL++S           D+W R+ERS GKF  +F+LP N  +D V+  +ENGVL +++ K    ++K P V  I
Sbjct:   52 KETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPK---EEVKKPEVKSI 150          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17
Identity = 43/103 (41.75%), Postives = 66/103 (64.08%), Query Frame = -1
Query:  322 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKK--LSPAQIKGPRVVG 624
            KETPE H    D+PG+K++E+K+EV ++RVL++S           D+W RVERS GKF  +F+LP N  +D V+  +ENGVL +++ K  +  A++K   + G
Sbjct:   56 KETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.844e-17
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = -1
Query:  328 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRV 624
            KETPE H    D+PG+K++E+K+E+ ++RVL++S           DQW R+ERS GKF  +F+LP N  +D V+  +ENGVL +++ K    ++K P V
Sbjct:   56 KETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPK---EEVKKPEV 151          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.715e-17
Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = -1
Query:  319 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI 624
            KETPE H    D+PG+K++E+K+EV E+RVL++S           D W RVERS GKF  +F+LP N  +D V+  +ENGVL +++ K    ++  P V  I
Sbjct:   52 KETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPK---EEVNNPDVKSI 150          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.715e-17
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = -1
Query:  319 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI 624
            KETPE H    D+PG+K +E+K+EV E+RVL++S           D+W RVERS GKF  +F+LP N  +D V+  +ENGVL +++ K    ++K P V  I
Sbjct:   52 KETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPK---EEMKKPDVKSI 150          
The following BLAST results are available for this feature:
BLAST of CX047188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
HSP41_SOYBN3.025e-3563.6422.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP22_ARATH1.961e-3461.6722.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP41_PEA6.973e-3261.6122.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HS232_ORYSJ6.989e-2447.7923.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP11_MEDSA5.731e-1844.1218.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP11_SOLLC1.277e-1743.1417.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP11_PEA1.277e-1741.7518.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP12_MEDSA2.844e-1742.4218.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP12_SOLPE3.715e-1743.1417.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_SOLPE3.715e-1744.1217.7 kDa class I heat shock protein OS=Solanum per... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12F09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F09-K17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047188 ID=CX047188; Name=CX047188; organism=Citrus sinensis; type=EST; length=624bp
TTTTTTTTTTTTTTTTTAAAAAAAAAAAAGCTGTATCAGCTTCATGGGCT
GCCCCGTTATTTATACTTTAATAGGGGAAAAAAAATGTTACCAAAAAAAA
TTATTTTACAGTATTAAACTTATTACAAAACAGCAAATTTTGCCTCAAAC
GAAAACAACGACAAAACAAAAGTAAAAAACAAAGCTAGCTCAACATTGCA
GTAAAACCCCCCTTATTCCCCACACCACACTGACATAAACCCAAGGGGAG
GGAAAAAACCCCTAAAGCTCTTGCCTAACCCCCCTCTGCAGCTTGGCCGT
TTCGTCCTCCCCCCCCGCAATGCCGACAACTCTCGGACCTTTGATCTGGG
CAGGGGACAGCTTCTTCAAGGACAAAGGGAGCACACCATTTTCAAGCTTA
ACCTGGACAAAATCTAAATCCCCATTGGCCGGGAGCTTGAACTGCCCCCA
AAACTTGCCATGGGATCTCTCCACTCTGGGCCACTGATCGCCCTTCTTCC
CCCCCCCCCGTTTCCCCTCCCCGCTCACTCGCAGCACGCGATTCTCCCCA
ACTTCAATCTTCAGCTCGTCCCTCTTCACCCCCGGTACATCCAGCATTAT
GAAGTGACCCTCCGGGGTCTCTTT
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