FC871821

Overview
NameFC871821
Unique NameFC871821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC871821 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.636e-40
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDNRHAGDLRNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELKLKTGNAGGKVSCGI 511
            P     GKEHG PED+ RHAGDL N+ VGDDGTATFT++D+QIPL+GPNSI+GRAVV HADPDDLG+GGHEL   TGNAGG+V+CG+
Sbjct:   61 PHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGV 147

HSP 2 Score: 41.9726 bits (97), Expect = 4.636e-40
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPHFNPA K
Sbjct:   49 LGDTTNGCMSTGPHFNPAGK 68

HSP 3 Score: 21.1718 bits (43), Expect = 4.636e-40
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = 3 
Query:  186 GPHEFHVHAL 215
            G H FHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of FC871821 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.920e-39
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 2 
Query:  269 GKEHGPPEDDNRHAGDLRNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELKLKTGNAGGKVSCGI 511
            GKEHG PEDD RHAGDL N+ VGDDGTATFT++D+QIPLSGPNSI+GRAVV HA+PDDLG+GGHEL   TGNAGG+V+CGI
Sbjct:   67 GKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGI 147

HSP 2 Score: 38.5058 bits (88), Expect = 4.920e-39
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPH+NP  K
Sbjct:   49 LGDTTNGCMSTGPHYNPNGK 68

HSP 3 Score: 21.1718 bits (43), Expect = 4.920e-39
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = 3 
Query:  186 GPHEFHVHAL 215
            G H FHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of FC871821 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.920e-39
Identity = 62/87 (71.26%), Postives = 73/87 (83.91%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDNRHAGDLRNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELKLKTGNAGGKVSCGI 511
            P     GKEHG PEDD RHAGDL NVNVGDDG  +F+++D+QIPL+GPNSI+GRAVV HADPDDLG+GGHEL   TGNAGG+V+CG+
Sbjct:   61 PHFNPAGKEHGAPEDDIRHAGDLGNVNVGDDGKVSFSIIDSQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGV 147

HSP 2 Score: 41.9726 bits (97), Expect = 4.920e-39
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPHFNPA K
Sbjct:   49 LGDTTNGCMSTGPHFNPAGK 68

HSP 3 Score: 21.557 bits (44), Expect = 4.920e-39
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = 3 
Query:  186 GPHEFHVHAL 215
            G H FHVHAL
Sbjct:   40 GHHGFHVHAL 49
[Close]
BLAST of FC871821 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 8.316e-39
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 2 
Query:  269 GKEHGPPEDDNRHAGDLRNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELKLKTGNAGGKVSCGI 511
            GK HG PED NRHAGDL N+ VGDDGTATFT+ D QIPL+GPNSI+GRAVV HADPDDLG+GGHEL L TGNAGG+V+CGI
Sbjct:   67 GKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGI 147

HSP 2 Score: 39.6614 bits (91), Expect = 8.316e-39
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPHFNP  K
Sbjct:   49 LGDTTNGCMSTGPHFNPDGK 68

HSP 3 Score: 21.1718 bits (43), Expect = 8.316e-39
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = 3 
Query:  186 GPHEFHVHAL 215
            G H FHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of FC871821 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 8.316e-39
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 2 
Query:  269 GKEHGPPEDDNRHAGDLRNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELKLKTGNAGGKVSCGI 511
            GK HG PED NRHAGDL N+ VGDDGTATFT+ D+QIPL GPNSI+GRAVV HA+PDDLG+GGHEL L TGNAGG+V+CGI
Sbjct:   67 GKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGI 147

HSP 2 Score: 40.0466 bits (92), Expect = 8.316e-39
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPHFNP  K
Sbjct:   49 LGDTTNGCMSTGPHFNPEGK 68

HSP 3 Score: 21.1718 bits (43), Expect = 8.316e-39
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = 3 
Query:  186 GPHEFHVHAL 215
            G H FHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of FC871821 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.081e-38
Identity = 64/81 (79.01%), Postives = 72/81 (88.89%), Query Frame = 2 
Query:  269 GKEHGPPEDDNRHAGDLRNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELKLKTGNAGGKVSCGI 511
            GK HG PED NRHAGDL N+ VGDDGTATFT+ D+QIPLSGPNSI+GRA+V HADPDDLG+GGHEL L TGNAGG+V+CGI
Sbjct:   67 GKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHADPDDLGKGGHELSLSTGNAGGRVACGI 147

HSP 2 Score: 37.7354 bits (86), Expect = 1.081e-38
Identity = 15/20 (75.00%), Postives = 16/20 (80.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+  NGCMSTGPHFNP  K
Sbjct:   49 LGDNTNGCMSTGPHFNPDGK 68

HSP 3 Score: 21.1718 bits (43), Expect = 1.081e-38
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = 3 
Query:  186 GPHEFHVHAL 215
            G H FHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of FC871821 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.827e-38
Identity = 62/87 (71.26%), Postives = 71/87 (81.61%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDNRHAGDLRNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELKLKTGNAGGKVSCGI 511
            P     GKEHG P+D+ RHAGDL NV VG+DGTA FT+VD QIPL+GP+SIIGRAVV HADPDDLG+GGHEL   TGN GG+V+CGI
Sbjct:   61 PHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPDDLGKGGHELSKTTGNTGGRVACGI 147

HSP 2 Score: 40.817 bits (94), Expect = 1.827e-38
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGC+STGPHFNPA K
Sbjct:   49 LGDTTNGCLSTGPHFNPAGK 68

HSP 3 Score: 25.0238 bits (53), Expect = 1.827e-38
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHEFHVHAL 215
            GPH FHVHAL
Sbjct:   40 GPHGFHVHAL 49
[Close]
BLAST of FC871821 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.782e-38
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 2 
Query:  269 GKEHGPPEDDNRHAGDLRNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELKLKTGNAGGKVSCGI 511
            GKEHG PED+NRHAGDL N+ VG+DGTA+FT+ D QIPL+GP SIIGR VV HADPDDLG+GGHEL   TGNAGG+V+CGI
Sbjct:   67 GKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHADPDDLGKGGHELTKTTGNAGGRVACGI 147

HSP 2 Score: 40.817 bits (94), Expect = 6.782e-38
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPH+NPA K
Sbjct:   49 LGDTTNGCMSTGPHYNPAGK 68

HSP 3 Score: 21.1718 bits (43), Expect = 6.782e-38
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = 3 
Query:  186 GPHEFHVHAL 215
            G H FHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of FC871821 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 6.782e-38
Identity = 61/87 (70.11%), Postives = 70/87 (80.46%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDNRHAGDLRNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELKLKTGNAGGKVSCGI 511
            P     GKEHG P DDNRHAGDL N+ VG+DGTA+FT+ D QIPL+G NS+IGRAVV H DPDDLG+GGHEL   TGNAGG+V+CGI
Sbjct:   61 PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVACGI 147

HSP 2 Score: 41.9726 bits (97), Expect = 6.782e-38
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPHFNPA K
Sbjct:   49 LGDTTNGCMSTGPHFNPAGK 68

HSP 3 Score: 21.1718 bits (43), Expect = 6.782e-38
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = 3 
Query:  186 GPHEFHVHAL 215
            G H FHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of FC871821 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.933e-37
Identity = 61/87 (70.11%), Postives = 71/87 (81.61%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDNRHAGDLRNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELKLKTGNAGGKVSCGI 511
            P    LGKEHG P DDNRHAGDL NV VG DGT  F++ D+QIPLSGP+SI+GRAVV HADPDDLG+GGHEL   TGNAGG+++CG+
Sbjct:   63 PHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGV 149

HSP 2 Score: 40.0466 bits (92), Expect = 1.933e-37
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPHFNP  K
Sbjct:   51 LGDTTNGCMSTGPHFNPLGK 70

HSP 3 Score: 21.1718 bits (43), Expect = 1.933e-37
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = 3 
Query:  186 GPHEFHVHAL 215
            G H FHVHAL
Sbjct:   42 GLHGFHVHAL 51
The following BLAST results are available for this feature:
BLAST of FC871821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
SODC1_MESCR4.636e-4072.41Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC_SPIOL4.920e-3979.01Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC_CARPA4.920e-3971.26Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC_ARATH8.316e-3979.01Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]
SODC1_BRAJU8.316e-3977.78Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC_BRAOC1.081e-3879.01Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC_PAUKA1.827e-3871.26Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC_CAPAN6.782e-3875.31Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]
SODC_IPOBA6.782e-3870.11Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC_PINSY1.933e-3770.11Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DB11FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871821 ID=FC871821; Name=FC871821; organism=Citrus sinensis; type=EST; length=513bp
CAAGGAGGTTACTAGATGATGATGACAAGATGAAATGTTGTGATGCATGT
TTTTTGAGTACTACTAATAAGACAGGAGGTTGTAAATATGGCGTGTTGTA
TGCATCTCCTGTCGTATGCTTTTTCTTTTTCCCTTTTTCCCAGATGTCAA
TATGCTTTGACGTGAAATACTACCTTGTGGACTCTGGACCTCATGAATTC
CATGTTCATGCTCTTAGGAAACACAAAAAATGGTTGCATGTCTACCGGAC
CCCACTTTAACCCTGCTAGGAAAAGAACATGGACCTCCAGAGGATGATAA
TCGTCATGCTGGTGACTTAAGAAATGTCAATGTTGGTGATGATGGTACTG
CTACTTTTACAGTTGTTGACAATCAAATTCCTCTTTCTGGACCAAATTCA
ATTATTGGAAGGGCTGTTGTATTCCACGCAGATCCCGATGATCTTGGCCA
GGGCGGCCATGAGCTGAAACTCAAAACTGGAAATGCTGGTGGAAAAGTAT
CTTGCGGCATCAT
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