EH117792

Overview
NameEH117792
Unique NameEH117792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EH117792 vs. ExPASy Swiss-Prot
Match: EIF3F_ARATH (Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.142e-18
Identity = 47/79 (59.49%), Postives = 53/79 (67.09%), Query Frame = -2 
Query:   42 LSNDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLNTAAQM 278
            L ND+YKYVD  V G   PDN++GR +++ VASLPKL P  FD LVN             SITRTQLSLAEKLNTAAQM
Sbjct:  214 LINDVYKYVDSVVGGQIAPDNNIGRFIADAVASLPKLPPQVFDNLVNDSLQDQLLLLYLSSITRTQLSLAEKLNTAAQM 292
The following BLAST results are available for this feature:
BLAST of EH117792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EIF3F_ARATH2.142e-1859.49Eukaryotic translation initiation factor 3 subunit... [more]
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Properties
Property NameValue
Genbank descriptionfjfw32 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117792 ID=EH117792; Name=EH117792; organism=Citrus sinensis; type=EST; length=288bp
GTAGACTGCGTACCAATTCATGTGTCAGCGAGAAATTATGGCATCTGAGC
AGCGGTGTTCAACTTTTCTGCTAAGCTGAGCTGGGTCCTGGTGATACTTG
ACAAATATAGCAAGAGCAACTGGTCCTGTAGGCTGTCATTTACAAGCTTG
TCAAAAGCTGGAGGTGACAGTTTGGGAAGGGAGGCTACAGTCTCTGAAAG
AATACGCCCTACACTATTATCAGGTACAGCATGCCCTTCCACAGTGTCAT
CAACATATTTGTAGATATCGTTACTCAGGACTCATCGT
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