EG358384

Overview
NameEG358384
Unique NameEG358384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4378 contig Csv1_Contig4378:237..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358384 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.641e-31
Identity = 61/82 (74.39%), Postives = 75/82 (91.46%), Query Frame = 3
Query:    3 AGDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 248
            A DPNKPKRP SAFFVFMEEFR+ + K+HP+NK+V+AVGKA G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN++QAEG
Sbjct:   38 AKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119          
BLAST of EG358384 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.622e-29
Identity = 55/80 (68.75%), Postives = 70/80 (87.50%), Query Frame = 3
Query:    9 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 248
            DPNKPKRP SAFFVFME+FR+ YK+ HP NKSVA VGKAGG+KWK ++ A+KAP+++KAEKRK EYEK+++ YN++QA G
Sbjct:   32 DPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG 111          
BLAST of EG358384 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.217e-26
Identity = 55/76 (72.37%), Postives = 65/76 (85.53%), Query Frame = 3
Query:    9 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 236
            DPNKPKRP SAFFVFM +FREQYKKDHP NKSVAAVGKA GE+WKS+SE +KAPYV +A K+K EYE  ++ YN++
Sbjct:   41 DPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK 116          
BLAST of EG358384 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.711e-26
Identity = 54/82 (65.85%), Postives = 68/82 (82.93%), Query Frame = 3
Query:    9 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 254
            DPNKPKR  SAFFVFMEEFR+++K+ +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K +  YN+ ++   K
Sbjct:   37 DPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAK 118          
BLAST of EG358384 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.677e-25
Identity = 53/78 (67.95%), Postives = 65/78 (83.33%), Query Frame = 3
Query:    9 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 242
            DPNKPKR  SAFFVFM EFRE++K+ +PKNKSVAAVGKA GE+WKS+SE++KAPYVAKA K K EY K +  YN+ ++
Sbjct:   38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGES 115          
BLAST of EG358384 vs. ExPASy Swiss-Prot
Match: HMGT_ONCMY (High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.543e-13
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:    9 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 236
            DPN PKRP+SAFF+F  +FR Q K + P   S+  V K  GEKW +++  DK PY  KA + K +YEKD+  Y  +
Sbjct:   90 DPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAYRNK 164          
BLAST of EG358384 vs. ExPASy Swiss-Prot
Match: HMGB3_MOUSE (High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.632e-13
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:    9 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 236
            DPN PKRP S FF+F  EFR + K  +P   S+  V K  GE W ++S+ +K PYV KA K K +YEKD+ +Y  +
Sbjct:   89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADYKSK 163          
BLAST of EG358384 vs. ExPASy Swiss-Prot
Match: HMGB3_HUMAN (High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 3.437e-13
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 3
Query:    9 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 236
            DPN PKRP S FF+F  EFR + K  +P   S+  V K  GE W ++++++K PY+ KA K K +YEKD+ +Y  +
Sbjct:   89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSK 163          
BLAST of EG358384 vs. ExPASy Swiss-Prot
Match: HMGB3_BOVIN (High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.437e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 3
Query:    9 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 236
            DPN PKRP S FF+F  EFR + K  +P   S+  V K  GE W ++S+++K PY+ KA K K +YEKD+ +Y  +
Sbjct:   89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSK 163          
BLAST of EG358384 vs. ExPASy Swiss-Prot
Match: HMGB3_CHICK (High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.863e-13
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:    9 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 236
            DPN PKRP SAFF+F  EFR + K  +P   S+  V K  GE W ++S+ +K PY  KA K K +YEKD+ +Y  +
Sbjct:   89 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSK 163          
The following BLAST results are available for this feature:
BLAST of EG358384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
HMGL_SOYBN1.641e-3174.39HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI7.622e-2968.75HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_VICFA1.217e-2672.37HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
MNB1B_MAIZE2.711e-2665.85DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT6.677e-2567.95HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
HMGT_ONCMY1.543e-1347.37High mobility group-T protein OS=Oncorhynchus myki... [more]
HMGB3_MOUSE2.632e-1347.37High mobility group protein B3 OS=Mus musculus GN=... [more]
HMGB3_HUMAN3.437e-1344.74High mobility group protein B3 OS=Homo sapiens GN=... [more]
HMGB3_BOVIN3.437e-1346.05High mobility group protein B3 OS=Bos taurus GN=HM... [more]
HMGB3_CHICK5.863e-1347.37High mobility group protein B3 OS=Gallus gallus GN... [more]

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Properties
Property NameValue
Genbank description4f3 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0004f3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358384 ID=EG358384; Name=EG358384; organism=Citrus sinensis; type=EST; length=565bp
ACGCGGGGGACCCGAACAAGCCAAAGAGGCCAGCCAGCGCCTTCTTTGTT
TTCATGGAAGAATTCCGTGAACAATACAAGAAGGATCATCCTAAGAACAA
ATCAGTTGCTGCTGTTGGTAAAGCTGGTGGTGAGAAATGGAAGTCAATGT
CTGAAGCTGATAAAGCACCGTATGTTGCTAAGGCAGAGAAGCGCAAGGTT
GAGTATGAGAAGGATATGAAAAACTACAATAGGAGACAGGCGGAGGGAAC
TAAGCCGGAGGAAGAAGAGGAGTCTGAGAAGTCTATGTCAGAGGTGAATG
ATGAGGATGATGATGAAGAAGGCAGTGGCGAGGAGGATGATGATGAATAG
AAGTTGAAGGAAGAAATTAGCATAGTCATGTTAGGCTGTGACAATGTTTC
AAACAACATATGTTAATGCTTTGTGCTTCCATGTTAATTTTTTTGGATGC
TTTCATCATCTTCATCATCATGTAAGAGAATCATGTTGCTTCTCCCTCGA
CATTTTCTTATGCCTGCCTTTCGAAGAATTAATAGCTGTAGGTGGGAGAT
TCACTGCTCTATATG
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