FC871807

Overview
NameFC871807
Unique NameFC871807
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871807 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.553e-37
Identity = 81/150 (54.00%), Postives = 104/150 (69.33%), Query Frame = 3
Query:   21 GYPDKKPELTRPVLGG-KQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDP---DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDT-GDNILLFETPQTMDRDKF 455
            G PD   +L RPVLGG KQ PYPRRCRTGRP    D  SE R+GN YVPRDE FSEVK   F  KT+ SVLHA VP+ ++A +D    +L FP F  ID LF +GV LP +++ GF ++++PRL++ + D+ GD ILLF+TP  + +DKF
Sbjct:  287 GNPDSNGDLARPVLGGSKQFPYPRRCRTGRPPSKKDPKSETRKGNVYVPRDEEFSEVKNAQFLLKTLQSVLHAAVPAAQSALIDNLSLNLPFPSFFVIDKLFEDGVELPGVEKLGFLHSIVPRLLELLRDSPGDKILLFDTPANVQKDKF 436          
BLAST of FC871807 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.030e-33
Identity = 71/146 (48.63%), Postives = 95/146 (65.07%), Query Frame = 3
Query:   21 GYPDKKPELTRPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGN-FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPQTMDRDKF 455
            G PD  PEL RPV+GG  +PYPRRC+TGR  C+TD  SE+R G  FYVPRDE FS  K  +F+ K V + L ++ P +E+  + P   FP+F AI  LF EG+ LP  K  G    LLPR++KA+ +  D+IL F+ P  ++RD+F
Sbjct:  250 GDPDNDPELARPVIGGLTHPYPRRCKTGRKPCETDPSSEQRYGGEFYVPRDEEFSTAKGTSFTGKAVLAALPSIFPQIESVLLSPQEPFPHFKAIQNLFEEGIQLP--KDAGLL-PLLPRIIKALGEAQDDILQFDAPVLINRDRF 392          
BLAST of FC871807 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 4.376e-32
Identity = 76/150 (50.67%), Postives = 96/150 (64.00%), Query Frame = 3
Query:   21 GYPDKKPELTRPVLGG-KQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDP---DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDT-GDNILLFETPQTMDRDKF 455
            G PD   +L RPVLGG KQ PYPRRCRTGRP    D  SE R+GN YVPRDE FS  K+  F  KTV SVL A VP+ ++  +D    +L FP F  ID LF +GV LP + +  F  +++PRL++ + DT  + IL FETP  + +DKF
Sbjct:  270 GNPDSNGDLARPVLGGNKQFPYPRRCRTGRPPSKKDPKSETRKGNVYVPRDEEFSPEKEDYFLRKTVGSVLQAAVPAAQSLLLDKLKWNLPFPSFFVIDKLFEDGVELPGVDKLNFLESVVPRLLEHLRDTPAEKILRFETPANIQKDKF 419          
BLAST of FC871807 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.273e-31
Identity = 71/149 (47.65%), Postives = 100/149 (67.11%), Query Frame = 3
Query:   21 GYPDKKPELTRPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEG----FWNTLLPRLVKAIEDTGDNILLFETPQTMDRDKF 455
            G PDK  +  RPVLG K++PYPRRCRTGRP+   D  +E R    YVPRDE FS+VK  TFSA T+ S LHA++P++    ++   GF +F AIDAL+++G+ LP     G      N ++PR+V+ IEDT +++L FE P+ ++RD+F
Sbjct:  247 GDPDKNIDHKRPVLGTKEHPYPRRCRTGRPKTLYDPETETRSSPVYVPRDEQFSDVKGRTFSATTLRSGLHAILPAV-APLLNNSHGFSHFPAIDALYSDGIPLPVDGHGGNSFNVINDVIPRVVQMIEDTTEHVLRFEVPEMLERDRF 394          
BLAST of FC871807 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 9.442e-27
Identity = 64/149 (42.95%), Postives = 92/149 (61.74%), Query Frame = 3
Query:   21 GYPDKKPELTRPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGN---FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLP-PLKQEGFWNTLLPRLVKAIEDTGDNILLFETPQTMDRDKF 455
            G PD   EL RP LGG++ PYPRRCRTGR   DTD  SE+R       YVPRDE F E KQ TF+A  + +VLH L+PSL+ + +  D  F  F  ID+L+ EG+ L    + + F    LP++V  ++ + + +L ++TP+ + +DK+
Sbjct:  276 GNPDISRELARPTLGGREFPYPRRCRTGRSSTDTDMMSERRVEKPLPMYVPRDEQFEESKQNTFAACRLKAVLHNLIPSLKASILAED--FANFGEIDSLYKEGLLLKLGFQDDMFKKFPLPKIVTTLQKSSEGLLRYDTPKIVSKDKY 422          
BLAST of FC871807 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.103e-26
Identity = 64/148 (43.24%), Postives = 89/148 (60.14%), Query Frame = 3
Query:   21 GYPDKKPELTRPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGN---FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPQTMDRDKF 455
            G PDK  E  RP+LGG++ PYPRRCRTGRP  DT+  +E R       YVPRDEAF E+KQ  FS+  + +VLH L+PSL  +       F  F  ID L+ EG+ L    QE  +  +   LV+ I+++ + +L ++TP  + +DKF
Sbjct:  266 GNPDKGKEFIRPILGGEKIPYPRRCRTGRPPTDTNMLAESRVEKPHPIYVPRDEAFEELKQGAFSSGRLRAVLHTLIPSLIASISAETHNFQGFHHIDNLYKEGLRLKLGLQEHLFQKI--PLVQKIQESSEGMLRYDTPSILSKDKF 411          
BLAST of FC871807 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.358e-24
Identity = 70/156 (44.87%), Postives = 85/156 (54.49%), Query Frame = 3
Query:   30 DKKPELTRPVLGGKQNPYPRRCRTGRPRCDTDQFSEKR--EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEG--------FWNTLLPRLVK----AIEDTGDNILLFETPQTMDRDKF 455
            D     TRPVLGGK++PYPRRCRTGRPR   D FSE+R  + + YVPRDEAF+E K   F  K   S LHAL   L+TA       FP  SAID L+++     P++ EG           T L  L K    A  +    +  FETP+  DRDKF
Sbjct:  269 DDNNPTTRPVLGGKEHPYPRRCRTGRPRSKKDPFSEERSHKEHIYVPRDEAFTERKMGAFDTKKFMSQLHALTTGLKTA-KHKSQSFPSLSAIDQLYDDNFRNQPVQPEGGKLRFVIDLLETELLHLFKLEGAAFLEGIRRVFKFETPEIHDRDKF 423          
BLAST of FC871807 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 9.771e-24
Identity = 64/149 (42.95%), Postives = 91/149 (61.07%), Query Frame = 3
Query:   21 GYPDKKPELTRPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGN---FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTL-LPR-LVKAIEDTGDNILLFETPQTMDRDK 452
            G PDK  EL+RP LGGK+ PYPRRCRTGR    +D+ +E R       YVPRDE F E KQ TF+A  + +VLH L+PSL+ + V  D  F  F  ID L+ EG+ L    Q+  +    LP+ +V  ++++   +L ++TP+ + +DK
Sbjct:  270 GNPDKSSELSRPKLGGKEVPYPRRCRTGRQSTVSDKDAESRVEKPLPMYVPRDEQFEESKQDTFAAGRLKAVLHHLIPSLKASIVAED--FADFGEIDRLYKEGLLLKLGFQDDIFKKFPLPKVVVDTLQESTKGLLKYDTPKILSKDK 416          
BLAST of FC871807 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.333e-23
Identity = 65/156 (41.67%), Postives = 88/156 (56.41%), Query Frame = 3
Query:   36 KPELTRPVLGGKQNPYPRRCRTGRPRCDTDQFSEK---REGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDL--GFPYFSAIDALFNEGVNLPPLKQEG-----FWNTLLPRLVKAIEDTG-------DNILLFETPQTMDRDK 452
            KPE  RPVLGGK++PYPRRCRTGRPR  TD  SE+   ++G  YVPRDE F+E K+  F  K + S LH L   L+   V+ D+   FP  ++IDAL+++     P++ EG       + L   LV  ++  G         +  FETP+  D DK
Sbjct:  269 KPESKRPVLGGKEHPYPRRCRTGRPRSKTDPSSEEESHKKGEMYVPRDETFTERKEQAFLTKQLLSQLHGLCTGLK---VNKDILPSFPTLASIDALYDDDFRNQPVQPEGGKVRLILDLLAKELVHLVKLEGAEFVEGIRRVFKFETPEIHDMDK 421          
BLAST of FC871807 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 4.248e-19
Identity = 57/149 (38.26%), Postives = 80/149 (53.69%), Query Frame = 3
Query:   21 GYPDKKPELTRPVLGGKQNPYPRRCRTGRPRCDTDQFSEKR---EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDL-GFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPQTMDRDKF 455
            G PDK     RPVLGG+Q PYPRR RTGRP   TD  +E R       YV RDE F E K    S   + ++LH  +P L ++ V PD+  F  F  +D LF EG+ L     +  +  +    V+ I++  + +L ++TP  + +DKF
Sbjct:  252 GNPDKGVASARPVLGGEQMPYPRRMRTGRPSTATDASAESRVEYPEPIYVSRDEEFEEGKNEMLSEGAIKALLHNFMPLLVSS-VSPDIRDFAGFHDVDNLFKEGLRLKQALHDQLFQKI--PFVRKIQENSEGLLRYDTPDIIKKDKF 397          
The following BLAST results are available for this feature:
BLAST of FC871807 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
LOXC2_ORYSJ1.553e-3754.00Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX2_ARATH3.030e-3348.63Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOXC1_ORYSJ4.376e-3250.67Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX23_HORVU1.273e-3147.65Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX4_ARATH9.442e-2742.95Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX6_ORYSJ2.103e-2643.24Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX21_HORVU3.358e-2444.87Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX3_ARATH9.771e-2442.95Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX22_HORVU6.333e-2341.67Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX5_ORYSJ4.248e-1938.26Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK1DA03FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871807 ID=FC871807; Name=FC871807; organism=Citrus sinensis; type=EST; length=457bp
GCTTTCCAACAATAGTCTCTGGATATCCTGACAAAAAACCTGAATTAACA
AGGCCTGTGCTTGGAGGCAAACAAAACCCTTATCCTAGACGTTGCAGAAC
TGGACGCCCACGGTGTGACACAGATCAATTTTCGGAGAAAAGAGAGGGAA
ACTTTTATGTTCCAAGGGATGAAGCATTCTCGGAGGTAAAGCAGCTAACA
TTTTCAGCAAAGACGGTGTACTCAGTGTTGCATGCGTTGGTACCATCCTT
AGAAACCGCCTTTGTCGATCCTGATCTGGGGTTTCCATACTTCTCTGCTA
TTGACGCACTCTTCAATGAAGGAGTCAACTTGCCTCCACTCAAACAGGAA
GGTTTTTGGAACACACTGCTTCCCAGATTGGTTAAGGCAATTGAGGATAC
AGGAGATAATATTTTGCTGTTTGAAACGCCACAAACGATGGACAGAGACA
AATTCTT
back to top