EG358370

Overview
NameEG358370
Unique NameEG358370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5516 contig Csv1_Contig5516:60..470. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358370 vs. ExPASy Swiss-Prot
Match: STAD_CARTI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Carthamus tinctorius PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.171e-26
Identity = 58/95 (61.05%), Postives = 69/95 (72.63%), Query Frame = 1
Query:   22 YDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 306
            YDG D  LF HF+AVAQRLGVYTA DYADILEFL+GRW            R+AQ++VCGL PRIRRL+E A  RAK  + P+V FSWIF+R++ L
Sbjct:  304 YDGRDDNLFEHFSAVAQRLGVYTAKDYADILEFLVGRWKVADLTGLSGEGRKAQDYVCGLPPRIRRLEERAQGRAK--EGPVVPFSWIFDRQVKL 396          
BLAST of EG358370 vs. ExPASy Swiss-Prot
Match: STAD_SOLTU (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.078e-25
Identity = 58/95 (61.05%), Postives = 66/95 (69.47%), Query Frame = 1
Query:   22 YDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 306
            YDG D  LF HF+AVAQRLGVYTA DYADILEF +GRW            RRAQ++VCGLAPRIR+L+E A  RAK  K   V FSWIF +E+ L
Sbjct:  301 YDGRDDNLFEHFSAVAQRLGVYTAKDYADILEFHVGRWEVEKLTGLSSEGRRAQDYVCGLAPRIRKLEERAQARAKHAKS--VPFSWIFGKEIKL 393          
BLAST of EG358370 vs. ExPASy Swiss-Prot
Match: STAD_SPIOL (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.123e-25
Identity = 55/95 (57.89%), Postives = 68/95 (71.58%), Query Frame = 1
Query:   22 YDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 306
            YDG D  LF HF+AVAQRLGVYTA DYADILEFL+GRW            ++AQ++VC L PRIRRL+E A +RAK  + P + FSWIF+R++ L
Sbjct:  307 YDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWEVEKLTGLSSEGQKAQDYVCSLPPRIRRLEERARERAK--QAPSMPFSWIFDRQVKL 399          
BLAST of EG358370 vs. ExPASy Swiss-Prot
Match: STAD_SOLCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum commersonii PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.556e-24
Identity = 53/95 (55.79%), Postives = 66/95 (69.47%), Query Frame = 1
Query:   22 YDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 306
            YDG D  LF HF+ VAQRLGVYTA DYADILEFL+GRW             +A+++VCGLAPRIR+L+E A  RAK+  P  V FSW+F +++ L
Sbjct:  301 YDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWEIEKLTGLSGEGHKARDYVCGLAPRIRKLEERAQARAKQKAP--VPFSWVFGKDIKL 393          
BLAST of EG358370 vs. ExPASy Swiss-Prot
Match: STAD_HELAN (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.556e-24
Identity = 57/95 (60.00%), Postives = 67/95 (70.53%), Query Frame = 1
Query:   22 YDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 306
            YDG D  LF +F+AVAQRLGVYTA DYADILEFL+GRW            R+AQ++VCGLAPRIRRL+E    RAK  +   V FSWIF+RE+ L
Sbjct:  304 YDGRDDNLFENFSAVAQRLGVYTAKDYADILEFLVGRWKVADLTGLSGEGRKAQDYVCGLAPRIRRLEERNSARAK--ESVNVPFSWIFDREVKL 396          
BLAST of EG358370 vs. ExPASy Swiss-Prot
Match: STAD_RICCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.032e-24
Identity = 55/95 (57.89%), Postives = 67/95 (70.53%), Query Frame = 1
Query:   22 YDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 306
            YDG D  LF HF+AVAQRLGVYTA DYADILEFL+GRW            ++AQ++VC L PRIRRL+E A  RAK  + P + FSWIF+R++ L
Sbjct:  304 YDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAK--EAPTMPFSWIFDRQVKL 396          
BLAST of EG358370 vs. ExPASy Swiss-Prot
Match: STAD_BRANA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.528e-24
Identity = 56/95 (58.95%), Postives = 65/95 (68.42%), Query Frame = 1
Query:   22 YDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 306
            YDG D  LF +F++VAQRLGVYTA DYADILEFL+GRW             +AQE++CGL PRIRRL E A  RAK  K P V FSWI +RE+ L
Sbjct:  306 YDGRDESLFDNFSSVAQRLGVYTAKDYADILEFLVGRWKIESLTGLSGEGNKAQEYLCGLTPRIRRLDERAQARAK--KGPKVPFSWIHDREVQL 398          
BLAST of EG358370 vs. ExPASy Swiss-Prot
Match: STAD_ORYSJ (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0379900 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.317e-23
Identity = 53/95 (55.79%), Postives = 65/95 (68.42%), Query Frame = 1
Query:   22 YDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 306
            YDG D  LF H +AVAQRLGVYT  DYAD+LEFL+ RW            RRAQ+FVC LAPRIRRL E A  RAK  + P++ FSW+++R++ L
Sbjct:  298 YDGKDDNLFEHLSAVAQRLGVYTVRDYADMLEFLVQRWKVADLTGLSGEGRRAQDFVCTLAPRIRRLDERAQARAK--QAPVIPFSWVYDRKVQL 390          
BLAST of EG358370 vs. ExPASy Swiss-Prot
Match: STAD_OLEEU (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Olea europaea PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.317e-23
Identity = 54/95 (56.84%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   22 YDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 306
            YDG D  LF +F++VAQRLGVYTA DYADILEFL+GRW            R+AQ++VC L PRIRRL+E A  R KK       FSWIF RE++L
Sbjct:  298 YDGQDDNLFENFSSVAQRLGVYTAKDYADILEFLVGRWDIEKLTGLSGEGRKAQDYVCTLPPRIRRLEERAQSRVKKAS--ATPFSWIFGREINL 390          
BLAST of EG358370 vs. ExPASy Swiss-Prot
Match: STADS_BRANA (Acyl-[acyl-carrier-protein] desaturase, seed specific, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.317e-23
Identity = 55/95 (57.89%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   22 YDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 306
            YDG D  LF +F++VAQRLGVYTA DYADILEFL GRW             +AQE++CGL PRIRRL E A  RAK  K P + FSWI +RE+ L
Sbjct:  307 YDGRDDNLFDNFSSVAQRLGVYTAKDYADILEFLAGRWRIESLTGLSGEGNKAQEYLCGLTPRIRRLDERAQARAK--KGPKIPFSWIHDREVQL 399          
The following BLAST results are available for this feature:
BLAST of EG358370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
STAD_CARTI2.171e-2661.05Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOLTU1.078e-2561.05Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SPIOL9.123e-2557.89Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOLCO1.556e-2455.79Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_HELAN1.556e-2460.00Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_RICCO2.032e-2457.89Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_BRANA4.528e-2458.95Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_ORYSJ1.317e-2355.79Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_OLEEU1.317e-2356.84Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STADS_BRANA1.317e-2357.89Acyl-[acyl-carrier-protein] desaturase, seed speci... [more]

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Properties
Property NameValue
Genbank description1b5 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0001b5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358370 ID=EG358370; Name=EG358370; organism=Citrus sinensis; type=EST; length=411bp
TCGAGCGGCCGCCCGGGCAGGTACGATGGGCATGACCCACGGCTGTTTGC
GCATTTTGCGGCAGTGGCTCAGCGGCTTGGCGTGTATACGGCACATGACT
ATGCGGATATTTTAGAGTTTTTGATTGGACGGTGGGGATTGGAAAAGCTG
GAAGGCTTGACGGGTGAAGGGAGACGTGCACAAGAGTTTGTGTGCGGCTT
AGCGCCTAGGATTAGGCGACTGCAGGAGTTAGCCGATCAGCGAGCCAAGA
AGCTGAAGCCGCCTCTCGTTAAGTTTAGCTGGATTTTTAATAGGGAACTC
AGCCTGTAAAAATTAAAAATTAAAAACCCCAAAAAAAAATTTTTTTTTTC
TTTTACAATGTATTTCCCTAATGTTATGCATACATCGTGGTACCTCGGCC
GCGACCACGCT
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