EY720587

Overview
NameEY720587
Unique NameEY720587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9243 contig Csv1_Contig9243:303..1121. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 431.795 bits (1109), Expect = 2.212e-120
Identity = 212/236 (89.83%), Postives = 223/236 (94.49%), Query Frame = 2
Query:   26 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDITNPGR 733
            KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDP KWGVNVQ LSGSP+NFQVYTALLKPH+RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL+ESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDY+RIRKVCNKQKAI+LADMAHISGLVAAGVIPSPF+YA V  TTTHKSL GPRG MI +R GV ++   G+
Sbjct:   76 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYDRIRKVCNKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKEVNKQGK 311          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 430.639 bits (1106), Expect = 4.928e-120
Identity = 213/239 (89.12%), Postives = 222/239 (92.89%), Query Frame = 2
Query:   26 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDITNPGRGCL 742
            KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDPEKWGVNVQ LSGSP+NF VYTALLKPH+RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL+ESTGYIDYDQ+EKSATLFRPKLIVAGASAYARLYDY RIRKVCNKQKA+MLADMAHISGLVAA VIPSPF+YA V  TTTHKSL GPRG MI FR GV +I   G+  L
Sbjct:   75 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVL 313          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 429.869 bits (1104), Expect = 8.405e-120
Identity = 211/236 (89.41%), Postives = 222/236 (94.07%), Query Frame = 2
Query:   26 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDITNPGR 733
            KGLELIPSENFTS+SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDP KWGVNVQ LSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL+ESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDY RIRKVC+KQKA++LADMAHISGLVAAGVIPSPF+YA V  TTTHKSL GPRG MI FR G+ ++   G+
Sbjct:   76 KGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGK 311          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 427.172 bits (1097), Expect = 5.448e-119
Identity = 211/236 (89.41%), Postives = 220/236 (93.22%), Query Frame = 2
Query:   26 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDITNPGR 733
            KGLELIPSENFTS+SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDP KWGVNVQ LSGSP+NF VYTALLK HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDY RIRKVC+KQKAIMLADMAHISGLVAAGVIPSPF+YA V  TTTHKSL GPRG MI FR G+ ++   G+
Sbjct:   76 KGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAIMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGK 311          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 420.624 bits (1080), Expect = 5.099e-117
Identity = 210/239 (87.87%), Postives = 219/239 (91.63%), Query Frame = 2
Query:   26 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDITNPGRGCL 742
            KGLELI SENFTS+SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLD  KWGVNVQ LSGSP+NF VYTALLK HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDY RIRKVC+KQKAI+LADMAHISGLVAAGVIPSPF+YA V  TTTHKSL GPRG MI FR GV ++   G+  L
Sbjct:   76 KGLELILSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDAAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEVNKQGKEVL 314          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 333.183 bits (853), Expect = 1.071e-90
Identity = 159/233 (68.24%), Postives = 192/233 (82.40%), Query Frame = 2
Query:   38 LIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDITNPGRG 736
            LI SENFT+ +V  A+G+ M NKYSEGYPGARYYGGNE+I   E LCQ+RAL+AF L P+KWGVNVQ+LSGSP+N QVY A++KPH+R+M LDLPHGGHLSHGYQTD++KISAVS +FETMPYR++  TG IDYD LEK+A L+RPK++VAG SAY RL DY+R+R++ +K  A ++ DMAHISGL+AAGVIPSPFEYA +  TTTHKSL GPRG MI FR GV  + NP  G
Sbjct:   42 LIASENFTTTAVFDALGTPMCNKYSEGYPGARYYGGNEHIHRMELLCQERALKAFGLTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLDLPHGGHLSHGYQTDSRKISAVSTYFETMPYRVDLETGLIDYDMLEKTAVLYRPKVLVAGTSAYCRLIDYKRMREIADKVGAYLVVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRRGVRSV-NPKTG 273          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.398e-90
Identity = 166/257 (64.59%), Postives = 192/257 (74.71%), Query Frame = 2
Query:   26 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDITNPGRGCL*L*RERKSAGLREGQVGG 796
            + + LI SENFTS +VM A+GS+M NKYSEGYPGARYYGGNE+ID AE LCQ RALEAF LD EKWGVNVQ  SGSP+N Q Y A++KPHDR+M LDLPHGGHLSHG+ T  K ISAVS +F TMPY +N+ TG IDYD LEK+A  FRPK+IVAGASAYARL DY+R+RK+     A +L DMAHISGLVAAGVIPSPFEYA +  TTTHKSL GPRG MI +R G       G   L    ++ +  +  G  GG
Sbjct:   38 ESIALIASENFTSRAVMDALGSIMQNKYSEGYPGARYYGGNEFIDQAERLCQTRALEAFHLDGEKWGVNVQPHSGSPANLQAYQAVMKPHDRLMGLDLPHGGHLSHGFSTPQKAISAVSTYFSTMPYNVNKETGIIDYDSLEKAAIQFRPKVIVAGASAYARLVDYKRMRKITEMCNAYLLCDMAHISGLVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFYRKGTRSHDKRGNPILYELEDKINFSVFPGHQGG 294          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 4.069e-90
Identity = 159/224 (70.98%), Postives = 185/224 (82.59%), Query Frame = 2
Query:   38 LIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGV 709
            LI SENFTS +VM A+GSVM+NKYSEGYPGARYYGGN++ID  E+LCQ+RAL AF LDP KWGVNVQ LSGSP+N QVY A++ PH R+M LDLP GGHLSHGYQTDTKKISAVS +FE+MPYR++ +TG IDYD LE  A LFRPK++VAG SAY RL DY R+R++ +   A ++ DMAHISGLV+AGVIPSPFEYA V  TTTHKSL GPRG MI FR G+
Sbjct:   36 LIASENFTSRAVMDALGSVMSNKYSEGYPGARYYGGNKFIDQIETLCQERALAAFNLDPAKWGVNVQCLSGSPANMQVYQAIMPPHGRLMGLDLPSGGHLSHGYQTDTKKISAVSTYFESMPYRVDPNTGLIDYDMLEHDAQLFRPKILVAGTSAYCRLIDYARMRQIADSVNAYLVVDMAHISGLVSAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRRGL 259          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.184e-89
Identity = 156/233 (66.95%), Postives = 190/233 (81.55%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDITNPG 730
            + LIPSENFTS +V+ A+GS M NKYSEGYPGARYYGGNE+ID +E LCQ RALE F LDP++WGVNVQ+LSG+P+N  VY+AL+  HDR+M LDLPHGGHLSHGYQT TKKIS +S +FET+PYRL+E TGYIDY++LE+ A  +RPK+IVAGASAY+RL DY R+R++C+K  A ++ADMAHISGLVAA V+P PF +A +  TT+HKSL GPRG MI FR GV      G
Sbjct:   77 INLIPSENFTSQAVLDALGSPMQNKYSEGYPGARYYGGNEFIDASERLCQDRALETFGLDPKEWGVNVQALSGAPANLYVYSALMDTHDRLMGLDLPHGGHLSHGYQTPTKKISFISKYFETLPYRLDEKTGYIDYNKLEELAITYRPKIIVAGASAYSRLIDYARLREICDKVNAYLMADMAHISGLVAAKVMPGPFTHADIVTTTSHKSLRGPRGAMIFFRRGVRRTNKKG 309          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 326.635 bits (836), Expect = 1.002e-88
Identity = 156/235 (66.38%), Postives = 191/235 (81.28%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDITNPGRG 736
            ++LI SENFTS SV  A+G+ ++NKYSEGYPGARYYGGNE+ID  E LCQ+RAL+AF + P+KWGVNVQ+LSGSP+N QVY A++KPH+R+M L LP GGHLSHGY T+ +KISAVS +FE+ PYR+N  TG IDYD LEK+A L+RPK++VAG SAY RL DY+R+R++ +K  A ++ DMAHISGL+AAGVIPSPFEYA +  TTTHKSL GPRG MI FR GV  I NP  G
Sbjct:   39 IDLIASENFTSTSVFDALGTPLSNKYSEGYPGARYYGGNEHIDRMEILCQQRALKAFHVTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLYLPDGGHLSHGYATENRKISAVSTYFESFPYRVNPETGIIDYDTLEKNAILYRPKVLVAGTSAYCRLIDYKRMREIADKCGAYLMVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRRGVRSI-NPKTG 272          
The following BLAST results are available for this feature:
BLAST of EY720587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_SOLTU2.212e-12089.83Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH4.928e-12089.12Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_PEA8.405e-12089.41Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR5.448e-11989.41Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYN_FLAPR5.099e-11787.87Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYC_CANAL1.071e-9068.24Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYC_SCHPO1.398e-9064.59Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYD_SCHPO4.069e-9070.98Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYM_NEUCR1.184e-8966.95Putative serine hydroxymethyltransferase, mitochon... [more]
GLYC_YEAST1.002e-8866.38Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-011-E09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720587 ID=EY720587; Name=EY720587; organism=Citrus sinensis; type=EST; length=818bp
CACGCGTCCGTTTTGTGTGATTTTGAAGGGACTTGAACTCATTCCTTCAG
AGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGACC
AACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACGA
GTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCCCTGGAAGCAT
TTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGGA
TCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATAG
GATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTATC
AGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAATG
CCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGTTGGA
GAAAAGTGCCACCCTCTTCAGGCCAAAATTGATTGTTGCTGGTGCTAGTG
CTTATGCACGATTGTATGATTATGAGCGTATTCGCAAGGTTTGCAACAAA
CAAAAAGCTATAATGTTGGCAGATATGGCACACATTAGTGGGTTGGTTGC
TGCTGGTGTCATCCCTTCACCTTTTGAGTATGCACATGTTGGTGACACCA
CAACTCACAAATCACTTCCTGGGCCACGTGGCACCATGATCTCCTTTAGG
ACGGGAGTGACAGACATTACAAACCCGGGAAGGGGGTGTCTCTGATTATG
AAGAGAAAGGAAGTCAGCGGGCTTGCGTGAAGGCCAGGTGGGCGGAATAG
CGGGGGATTAGTGGTTAG
back to top