CX672180

Overview
NameCX672180
Unique NameCX672180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672180 vs. ExPASy Swiss-Prot
Match: HTH_ARATH (Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.609e-55
Identity = 118/231 (51.08%), Postives = 145/231 (62.77%), Query Frame = -2
Query:  177 YIEAASGENFAGGSPSP--RDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXKY-ESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 860
            Y+EA++G    G SP      YG+ S K    S +P KQR PEA    I   K     AF G FILEK+  P+S GHL L   N +DNPSVTFNYFK P DLQRCV+                    +  +V  +++++  A +NL P+  N + S+ QFC+DTV+TIWHYHGGC VGKVV  + KVLGVD LRVIDGSTF  SPGTNPQAT+MM+GRYMGV+IL ERL +
Sbjct:  363 YVEASTG---FGQSPESIHTHYGIMSNKNELFSTIPAKQRRPEATQAYITRNKYQLHEAFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVTSNRFLNYTQCDKQNVHKMLSLSVKANINLRPKQLNDTKSMAQFCKDTVVTIWHYHGGCLVGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGRYMGVKILRERLGN 590          
BLAST of CX672180 vs. ExPASy Swiss-Prot
Match: MDL1_PRUSE ((R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.721e-31
Identity = 71/165 (43.03%), Postives = 97/165 (58.79%), Query Frame = -2
Query:  174 KVMGPVSTGHLELRTR-NPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 665
            KV GP+S G L L++  N   +P+V FNY+  P DL  CV G                K E +      N+        LP+      + E FCR++V + WHYHGGC VGKV+D D++V G+DALRV+DGSTF Y+P ++PQ   +MLGRY+G++IL ER AS+
Sbjct:  388 KVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNPTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGIEGFNILGIP----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGIDALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 548          
BLAST of CX672180 vs. ExPASy Swiss-Prot
Match: MDL4_PRUSE ((R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.816e-28
Identity = 68/167 (40.72%), Postives = 97/167 (58.08%), Query Frame = -2
Query:  177 ILEKVMGPVSTGHLELRTR-NPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 674
            I+ KV GP+S G L L++  N +  P+V FNY  +P DL  CV G                K + +      N+  +     LP +     + E+FCRDTV + WHYHGG  VGKV+D +++V G++ALRV+DGSTF  +P ++PQ   +MLGRY+G +I+ ER AS
Sbjct:  387 IVSKVPGPLSAGSLTLQSSSNVSVAPNVKFNYCSDPVDLTHCVSGMKKIGVFLSTDALKPYKVDDLPGIDGFNILGTP----LPENQTDDAAFEKFCRDTVASYWHYHGGAIVGKVIDGNFRVTGINALRVVDGSTFPATPASHPQGFYLMLGRYVGTKIVQERSAS 549          
BLAST of CX672180 vs. ExPASy Swiss-Prot
Match: MDL2_PRUSE ((R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.816e-28
Identity = 70/168 (41.67%), Postives = 96/168 (57.14%), Query Frame = -2
Query:  177 ILEKVMGPVSTGHLELR-TRNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXKYESMSVPILVNM-TASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 674
            I+ KV GP+S G + L+ T +    P+VTFNY+    DL  CV G                 Y+   +P +        P   LP +     + E FCR+ V + WHYHGGC VG+V+D D++V G++ALRV+DGSTF  +P ++PQ   +MLGRYMG +IL ERLAS
Sbjct:  387 IVNKVPGPLSHGTVLLQSTSDVRVAPNVTFNYYSNTTDLAHCVSG--MKKIGEFLSSDALKPYKVEDLPGIEGFDILGIP---LPENQTDDAAFETFCREAVASYWHYHGGCLVGEVLDDDFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGRYMGTKILQERLAS 549          
BLAST of CX672180 vs. ExPASy Swiss-Prot
Match: MDL3_PRUSE ((R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.113e-27
Identity = 67/167 (40.12%), Postives = 93/167 (55.69%), Query Frame = -2
Query:  177 ILEKVMGPVSTGHLELRTRNP-NDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 674
            I+ KV GP+S G + L + +     P+V FNY+    DL  CV G                K E +      N+        LP +     + E FCR++V + WHYHGGC VGKV+D  ++V G++ALRV+DGSTF  +P ++PQ   +MLGRYMG++IL ER AS
Sbjct:  386 IVNKVPGPLSHGTVTLNSSSDVRVGPNVKFNYYSNLTDLSHCVSGMKKLGEVLSTDALEPYKVEDLPGIDGFNILGIP----LPENQTDDAAFETFCRESVASYWHYHGGCLVGKVLDDGFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGRYMGIQILQERSAS 548          
BLAST of CX672180 vs. ExPASy Swiss-Prot
Match: MDL1_PRUDU ((R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.373e-24
Identity = 62/165 (37.58%), Postives = 88/165 (53.33%), Query Frame = -2
Query:  186 ILEKVMGPVSTGHLELRTRNP-NDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXKYESMSVPILVNMT-ASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 674
            I+ +V GP+S G + L + +     P++ FNY+    DL  CV G                 Y++  V  +        P   LP +     S E FC D V + WHYHGG  VGKV+D  ++V+G+ ALRV+D STF Y P ++PQ   +MLGRY+G++IL ER
Sbjct:  386 IVSQVPGPLSHGSVTLNSSSDVRIAPNIKFNYYSNSTDLANCVSG--MKKLGDLLRTKALEPYKARDVLGIDGFNYLGVP---LPENQTDDASFETFCLDNVASYWHYHGGSLVGKVLDDSFRVMGIKALRVVDASTFPYEPNSHPQGFYLMLGRYVGLQILQER 545          
The following BLAST results are available for this feature:
BLAST of CX672180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
HTH_ARATH4.609e-5551.08Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=... [more]
MDL1_PRUSE2.721e-3143.03(R)-mandelonitrile lyase 1 OS=Prunus serotina GN=M... [more]
MDL4_PRUSE2.816e-2840.72(R)-mandelonitrile lyase 4 OS=Prunus serotina GN=M... [more]
MDL2_PRUSE2.816e-2841.67(R)-mandelonitrile lyase 2 OS=Prunus serotina GN=M... [more]
MDL3_PRUSE3.113e-2740.12(R)-mandelonitrile lyase 3 OS=Prunus serotina GN=M... [more]
MDL1_PRUDU9.373e-2437.58(R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_15E01_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15E01-J1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672180 ID=CX672180; Name=CX672180; organism=Citrus sinensis; type=EST; length=864bp
TTTTTTTTTTTTTTGCAGTTTATTAACTTTTATTTATTTATTACAAATTC
AATAAAACTCACAAAATTCAAATATTCCCTTTTATTATTATTATTTTTTA
AATGTTCAAATCAACGAAAAAAAAAAATCAAATTAACATATATATATGAT
GATGATTGACATTACTTTGAACCGTTACTTGCAAGTCTCTCACTCAGAAT
CCTGACTCCCATGTACCTTCCAAGCATCATGACCGTTGCTTGCGGATTAG
TCCCCGGGGAGTAATAAAACGTGGATCCGTCGATGACCCTCAATGCATCG
ACCCCAAGAACCTTATAATCATGATCAACAACCTTACCAACTTGGCAACC
TCCATGATAATGCCATATGGTCATCACTGTGTCCCTGCAAAATTGTTCCA
GTGATGTTGATGCATTGCTGTGTCTGGGCAGCAAATTGACCGGGGCACTG
GCAGTCATGTTTACCAGTATTGGCACTGACATACTCTCGTATTTAAACTT
AGAAAAAGATTTTGATTCAATTATTTTCTCTATGGTTGAAATGCCCTGTA
CACATCTTTGTAAGTCTTCAGGTTCCTTGAAGTAATTGAACGTGACGGAC
GGGTTATCGTTCGGGTTTCGGGTTCGGAGCTCCAAATGTCCCGTGGATAC
TGGGCCCATAACCTTTTCGAGAATGAATCCGCCTCTGAAAGCTGGATCAT
CAAGTGCTTTCATGTTTTCAATTGCTTCGGCTATAGCCTCTGGGGTCCTT
TGTTTGGGAGGCACTTTAGACAGCTGTCCAATCTTGGGAGAGAACATGCC
ATAGTCTCTTGGCGATGGCGACCCACCGGCGAAGTTTTCGCCACTTGCGG
CTTCTATGTAGCTT
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