CX672176

Overview
NameCX672176
Unique NameCX672176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672176 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 481.1 bits (1237), Expect = 3.448e-135
Identity = 228/253 (90.12%), Postives = 244/253 (96.44%), Query Frame = 3
Query:   84 LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPLSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 842
            ++ATPFLGQ++  AN L+DVV MG+A++TM N+LWYGPDRVKYLGP SAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCI PEVLEKW++VDFKEPVWFKAG+QIFS+GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL+NPVANNAWVYATKFVPG+
Sbjct:   14 VKATPFLGQTKN-ANPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGA 265          
BLAST of CX672176 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 456.447 bits (1173), Expect = 9.095e-128
Identity = 219/252 (86.90%), Postives = 234/252 (92.86%), Query Frame = 3
Query:   93 TPFL-GQSRT-TANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPLSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 842
            TPFL GQ R  +A+ L+D+    N + TMGN+LWYGPDRVKYLGP SAQTPSYL GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC+ PEVL+KW+ V+FKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGL GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL++PVANNAWV+ATKF PGS
Sbjct:   17 TPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPGS 268          
BLAST of CX672176 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 359.762 bits (922), Expect = 1.159e-98
Identity = 184/258 (71.32%), Postives = 202/258 (78.29%), Query Frame = 3
Query:   87 RATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKYLGPLSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 839
            + T FLG +      ++ V      + M     +    +WYGPDR KYLGP S QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+   QVVLMG VEG+R+ G P +GEG D +YPGG  FDPLGLADDP TFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct:    8 QTTSFLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP-LGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPG 262          
BLAST of CX672176 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 359.762 bits (922), Expect = 1.159e-98
Identity = 184/258 (71.32%), Postives = 202/258 (78.29%), Query Frame = 3
Query:   87 RATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKYLGPLSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 839
            + T FLG +      ++ V      + M     +    +WYGPDR KYLGP S QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+   QVVLMG VEG+R+ G P +GEG D +YPGG  FDPLGLADDP TFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct:    8 QTTSFLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP-LGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPG 262          
BLAST of CX672176 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.854e-97
Identity = 183/262 (69.85%), Postives = 205/262 (78.24%), Query Frame = 3
Query:   84 LRATPFLGQS--RTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPLSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 839
            ++ + F+GQ+  ++    ++ V   G  + TM          +WYG DR KYLGP S QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYLGNPNLVHAQSILA+   QVVLMG VEG+R+ G P +GEG D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct:    6 IQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP-LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPG 264          
BLAST of CX672176 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 4.868e-97
Identity = 176/220 (80.00%), Postives = 189/220 (85.91%), Query Frame = 3
Query:  183 LWYGPDRVKYLGPLSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 839
            +WYG DR KYLGP S QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILAV   QVVLMGL+EG+R+ G P +GEG D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct:   48 IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGP-LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPG 264          
BLAST of CX672176 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 1.084e-96
Identity = 176/220 (80.00%), Postives = 189/220 (85.91%), Query Frame = 3
Query:  183 LWYGPDRVKYLGPLSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 839
            +WYG DR K+LGP S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCI PE+L K   V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+   QVVLMGL+EG+R+ G P +GEG D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW +AT FVPG
Sbjct:   47 IWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSK-NGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGP-LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPG 263          
BLAST of CX672176 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 352.829 bits (904), Expect = 1.416e-96
Identity = 175/220 (79.55%), Postives = 188/220 (85.45%), Query Frame = 3
Query:  183 LWYGPDRVKYLGPLSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 839
            +WYGPDR KYLGP S Q PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QVVLMG VEG+R+ G P +GEG D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PVANNAW YAT FVPG
Sbjct:   48 IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP-LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPG 264          
BLAST of CX672176 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.850e-96
Identity = 175/220 (79.55%), Postives = 188/220 (85.45%), Query Frame = 3
Query:  183 LWYGPDRVKYLGPLSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 839
            +WYG DR KYLGP S QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QVVLMG VEG+R+ G P +GEG D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct:   20 IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGP-LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPG 236          
BLAST of CX672176 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 2.416e-96
Identity = 177/237 (74.68%), Postives = 195/237 (82.28%), Query Frame = 3
Query:  153 GNAKYTMGN-------ELWYGPDRVKYLGPLSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 839
            G A++TM          +WYGPDR KYLGP S Q PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC  PE+LEK   V F E VWFKAG+QIF+EGGLDYLGNPNL+HAQSILA+   QVVLMG VEG+R+ G P +GEG D LYPGG  FDPLGLADDP +FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ +PVANNAW +AT FVPG
Sbjct:   31 GQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEK-NGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGP-LGEGLDPLYPGGA-FDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPG 264          
The following BLAST results are available for this feature:
BLAST of CX672176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CB23_SOLLC3.448e-13590.12Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU9.095e-12886.90Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_ORYSJ1.159e-9871.32Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.159e-9871.32Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC2.854e-9769.85Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC4.868e-9780.00Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_LEMGI1.084e-9680.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI1.416e-9679.55Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB25_SOLLC1.850e-9679.55Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB215_PEA2.416e-9674.68Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_15D11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15D11-H21-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672176 ID=CX672176; Name=CX672176; organism=Citrus sinensis; type=EST; length=864bp
CAACCGACACAACATCCATAATACCAACTCTCAGGACAATGGCATCAATA
ATGGCGGCTGCTACTGCTAGCTCTAGCACTTCTCTTAGGGCAACCCCATT
TCTTGGCCAGAGTAGGACAACTGCTAACGCTCTAAAAGATGTTGTTCCGA
TGGGGAATGCCAAGTACACAATGGGAAATGAACTGTGGTATGGGCCAGAC
AGGGTGAAGTACTTGGGACCCCTTTCAGCACAGACTCCATCATACTTGAC
TGGAGAGTTTCCAGGTGACTATGGATGGGACACTGCTGGTTTGTCTGCTG
ATCCCGAGGCCTTTGCCAGGAACAGGGCTCTTGAGGTGATCCATGGCAGG
TGGGCTATGCTTGGAGCACTAGGCTGCATCACCCCTGAAGTTCTCGAGAA
ATGGCTTAGAGTAGACTTCAAGGAACCGGTTTGGTTCAAAGCTGGAGCTC
AGATTTTCTCAGAAGGTGGCCTTGACTACTTGGGAAACCCCAACCTTGTT
CATGCTCAAAGCATTCTGGCTGTCCTGGGATTCCAGGTTGTCCTCATGGG
GCTCGTTGAGGGTTTCCGTATCAATGGCCTCCCTGGTGTCGGAGAAGGAA
ACGACCTCTACCCTGGTGGCCAATATTTTGATCCCCTTGGCCTTGCTGAT
GATCCTGTTACGTTTGCTGAACTCAAGGTGAAGGAAATCAAGAATGGCAG
GCTAGCTATGTTTTCCATGTTTGGTTTCTTTGTCCAAGCTATTGTGACAG
GCAAAGGTCCCTTGGAGAACCTCCTGGACCACCTTGAGAACCCTGTTGCC
AACAATGCTTGGGTCTATGCTACCAAGTTTGTACCTGGATCATAAACTGA
TTATGATTACTGTT
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