CX672156

Overview
NameCX672156
Unique NameCX672156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX672156 vs. ExPASy Swiss-Prot
Match: Y3627_ARATH (VHS domain-containing protein At3g16270 OS=Arabidopsis thaliana GN=At3g16270 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.356e-33
Identity = 73/118 (61.86%), Postives = 85/118 (72.03%), Query Frame = -3 
Query:  382 PFGTMPYNIPAGMTLNPSIASQPMNYSAMGNLFAQQQ-FLAAMSNLQHIGNLNVHNSGAANLVGGNGG--SPLPDIFQPNFPTQASMPALNNSKKEDTRAFDFISDHLASARDSKRVA 726
            P G MP+N P GM +NP+ ASQP+NY+AM +L AQQQ +L  MSN Q  GNLN   SG    +G +GG  S LPDIFQPNF  QA    +N SKKEDTRAFDFISDHL SARD+KRV+
Sbjct:  573 PGGVMPFNFPQGMMMNPAFASQPLNYAAMASLLAQQQQYLGNMSNFQQFGNLNAQGSGNVLSMGTSGGNQSALPDIFQPNFGNQAPTSTMNGSKKEDTRAFDFISDHLTSARDTKRVS 690
The following BLAST results are available for this feature:
BLAST of CX672156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3627_ARATH2.356e-3361.86VHS domain-containing protein At3g16270 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_15C10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15C10-F19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672156 ID=CX672156; Name=CX672156; organism=Citrus sinensis; type=EST; length=893bp
ATTGACTATTATTGACTACTGTCCAACAAAGAAGCATTTCTCATGGTGTG
CATTTTATGCAGTCACGGGAATTAACAATAGAAAAGACTTGACAAATTCA
TCGTAAAGGAAGAACCAACAGGACAACGGGCAAAGTGTACAAATTAGAAA
AAAAAAAAAAAGAATATAAAAAGCTAACTGCATGGCCATTTCTTGTCTTC
CATCTCATATACCAACAATGCTATGAACCAATGAGCTGTTTCACTCTATT
CTTCAACCACACCTCCCTTCCATTTATGTGATGAAAAGAGATAACCATCT
CAGTACTAAGACTAACATCTTGCTCTCGACCTACTTGCCTCGTATAAATA
AAGCCTCAGCAAGAATAAACACCAAAATTTAAGCAACCCTCTTCGAATCA
CGAGCTGATGCAAGATGGTCTGAGATAAAATCGAATGCTCTCGTGTCCTC
TTTCTTTGAATTGTTCAGGGCAGGCATGGAAGCTTGAGTTGGAAAGTTTG
GTTGGAATATATCTGGAAGTGGTGAGCCTCCATTTCCTCCAACCAAATTG
GCGGCACCAGAATTATGAACATTCAGGTTACCAATATGTTGAAGGTTAGA
CATTGCAGCAAGGAATTGTTGCTGGGCAAATAAATTCCCCATGGCACTAT
AATTCATTGGCTGAGATGCAATAGATGGATTTAATGTCATGCCAGCTGGA
ATATTATATGGCATAGTACCGAATGGAAATGGGTTGGCATTCATCCCTGC
TGATTGAGAACCAAGTAGGCTGCTCAAAGCATCACTAGACAGCTGAATTA
TTGACGACTTTTAACGAAGAAGCAACATGAAACAGGAAGCATATATGCCC
ATATTAACCCCACCAAAAAAGGAAAAAAAAAAGCATAACTGGG
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