CX672153

Overview
NameCX672153
Unique NameCX672153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX672153 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 333.569 bits (854), Expect = 9.047e-91
Identity = 164/183 (89.62%), Postives = 176/183 (96.17%), Query Frame = -3 
Query:  322 TSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 870
            TSVTHLFPITKYLGLLATGMTADARTLVQQAR EAAEFRF YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVL ID+E GP+L+KCDPAGH+FGHKATSAGLK+QEAINFLEKKMKNDP+FT++ETVQTAIS LQSVLQEDFKA+EIEVGVV K+NPEFRVL+ +EIDEHLTAISERD
Sbjct:   64 TSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVLQEDFKATEIEVGVVRKDNPEFRVLTTDEIDEHLTAISERD 246
[Close]
BLAST of CX672153 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 1.182e-90
Identity = 166/183 (90.71%), Postives = 175/183 (95.63%), Query Frame = -3 
Query:  322 TSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 870
            TSV+HLFPITKYLGLLATGMTADARTLVQQAR EAAEFRFKYGYEMPVDVL+KWIADKSQVYTQHAYMRPLGVVAM+L IDEE GP+LFKCDPAGHFFGHKATSAG KEQEAINFLEKKMKNDPAF+++ETVQTAIS LQSVLQEDFKASEIEVGVV KE+P FRVL+ EEIDEHLTAISERD
Sbjct:   64 TSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVYTQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNDPAFSYEETVQTAISALQSVLQEDFKASEIEVGVVKKEDPIFRVLTTEEIDEHLTAISERD 246
[Close]
BLAST of CX672153 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 8.763e-86
Identity = 153/183 (83.61%), Postives = 171/183 (93.44%), Query Frame = -3 
Query:  322 TSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 870
            +SVTHLFPITKY+GL+ATG+TADAR+LVQQAR +AAEFRF YGYEMPVD+LAKWIADKSQVYTQHAYMRPLGVVAMV+ +DEE GP L+KCDPAGHF+GHKATSAG+KEQEA+NFLEKKMK +P+FTF ETVQTAIS LQSVLQEDFKA+EIEVGVV  ENPEFR L+ EEI+EHLTAISERD
Sbjct:   64 SSVTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTAISALQSVLQEDFKATEIEVGVVRAENPEFRALTTEEIEEHLTAISERD 246
[Close]
BLAST of CX672153 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.653e-84
Identity = 153/183 (83.61%), Postives = 169/183 (92.35%), Query Frame = -3 
Query:  322 TSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 870
            +SV+HLFP+TKYLGLLATGMTAD+R+LVQQAR EAAEFRF+YGYEMP D+LAKWIADKSQVYTQHAYMRPLGVVAMVL IDEE GP L+KCDPAGHF+GHKATSAG+KEQEA+NFLEKKMK +PAFT+ ETVQTAIS LQSVLQEDFKA+EIEVGVV  ++P FR L  EEIDEHLTAISERD
Sbjct:   64 SSVSHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPAFTYDETVQTAISALQSVLQEDFKATEIEVGVVRADDPLFRSLRTEEIDEHLTAISERD 246
[Close]
BLAST of CX672153 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 5.316e-83
Identity = 153/183 (83.61%), Postives = 168/183 (91.80%), Query Frame = -3 
Query:  322 TSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 870
            TSVTHLFPITKY+GLLATG+TADAR+LV QAR EAAEFRFK+GYEMPVDVLAKWIADK+QVYTQHAYMRPLGVVAMVL  DEE   +LFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK+DP F+++ETVQ AIS LQSVLQEDFKA+EIEVGVV K++  FR L+ EEID+HLTAISERD
Sbjct:   64 TSVTHLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQIAISALQSVLQEDFKATEIEVGVVRKDDRVFRALTTEEIDQHLTAISERD 246
[Close]
BLAST of CX672153 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.193e-58
Identity = 110/183 (60.11%), Postives = 150/183 (81.97%), Query Frame = -3 
Query:  322 TSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 870
            ++VTHLF IT+ +G + TGMTAD+R+ VQ+ARYEAA +++KYGYE+PVD+L K IAD SQVYTQ+A MRPLG   +++ IDEE GP+++KCDPAG++ G KAT+AG+K+ E+ +FLEKK+K    +TF++TV+TAI+ L +VL  DFK SEIEVGVV+ ENP+FR+L+  EID HL A++ERD
Sbjct:   64 STVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 246
[Close]
BLAST of CX672153 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.193e-58
Identity = 110/183 (60.11%), Postives = 150/183 (81.97%), Query Frame = -3 
Query:  322 TSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 870
            ++VTHLF IT+ +G + TGMTAD+R+ VQ+ARYEAA +++KYGYE+PVD+L K IAD SQVYTQ+A MRPLG   +++ IDEE GP+++KCDPAG++ G KAT+AG+K+ E+ +FLEKK+K    +TF++TV+TAI+ L +VL  DFK SEIEVGVV+ ENP+FR+L+  EID HL A++ERD
Sbjct:   64 STVTHLFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 246
[Close]
BLAST of CX672153 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.193e-58
Identity = 110/183 (60.11%), Postives = 150/183 (81.97%), Query Frame = -3 
Query:  322 TSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 870
            ++VTHLF IT+ +G + TGMTAD+R+ VQ+ARYEAA +++KYGYE+PVD+L K IAD SQVYTQ+A MRPLG   +++ IDEE GP+++KCDPAG++ G KAT+AG+K+ E+ +FLEKK+K    +TF++TV+TAI+ L +VL  DFK SEIEVGVV+ ENP+FR+L+  EID HL A++ERD
Sbjct:   64 STVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 246
[Close]
BLAST of CX672153 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.193e-58
Identity = 110/183 (60.11%), Postives = 150/183 (81.97%), Query Frame = -3 
Query:  322 TSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 870
            ++VTHLF IT+ +G + TGMTAD+R+ VQ+ARYEAA +++KYGYE+PVD+L K IAD SQVYTQ+A MRPLG   +++ IDEE GP+++KCDPAG++ G KAT+AG+K+ E+ +FLEKK+K    +TF++TV+TAI+ L +VL  DFK SEIEVGVV+ ENP+FR+L+  EID HL A++ERD
Sbjct:   64 STVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 246
[Close]
BLAST of CX672153 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.561e-50
Identity = 104/182 (57.14%), Postives = 133/182 (73.08%), Query Frame = -3 
Query:  322 SVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 867
            +VTHLF ITK +G   TG  AD+R+ VQ+ARYEAA FR+KYGYEMPVDVL + IAD +QVYTQ+A MRPLG   ++++ D E GP ++K DPAG+F G KA S G K  EA ++LEKK K  P  + ++ +Q AIS L SVL  DFK + IE+GVVSK +P FR+L   EI+EHLT I+E+D
Sbjct:   65 TVTHLFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLGCSMVLIAYDNEIGPSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYK--PNLSEEKAIQLAISCLSSVLAIDFKPNGIEIGVVSKSDPTFRILDEREIEEHLTKIAEKD 244
The following BLAST results are available for this feature:
BLAST of CX672153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
PSA6_SOYBN9.047e-9189.62Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]
PSA6_TOBAC1.182e-9090.71Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA6A_ARATH8.763e-8683.61Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA6B_ARATH1.653e-8483.61Proteasome subunit alpha type-6-B OS=Arabidopsis t... [more]
PSA6_ORYSJ5.316e-8383.61Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]
PSA6_RAT1.193e-5860.11Proteasome subunit alpha type-6 OS=Rattus norvegic... [more]
PSA6_MOUSE1.193e-5860.11Proteasome subunit alpha type-6 OS=Mus musculus GN... [more]
PSA6_HUMAN1.193e-5860.11Proteasome subunit alpha type-6 OS=Homo sapiens GN... [more]
PSA6_BOVIN1.193e-5860.11Proteasome subunit alpha type-6 OS=Bos taurus GN=P... [more]
PSA6_DROME1.561e-5057.14Proteasome subunit alpha type-6 OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_15C08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15C08-F15-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672153 ID=CX672153; Name=CX672153; organism=Citrus sinensis; type=EST; length=872bp
TTTTTTTTTTTTTTTTTAGGCAGGAAATTACTAAAATTGCCATTCATCAT
AATAATAACAATGGCCATGAAAGGCACTTGTCAATAGTCGTTATCAAGCC
AATGTAGTAGTAAAAGTCAACAGCTACCACTAGCACAAAGCACTTCCCCT
GGTTGGCACAGCATAGTCACATAACTTGTTTTTCAACGTTTTGTTTTCTG
CTTTGGAGGGCAATGGCTGTGTATTACCGAATGCACTTAAAATTATAAAT
TCAAGATACAGGGAAAAGCATTTTTGTTTTTTGGTTTCAGCATTTATGAT
GGGGCGTGAAACCACCTCCTAATCTCGTTCACTTATAGCAGTCAAGTGCT
CATCGATCTCCTCGATGGACAAAACTCTGAATTCTGGATTCTCCTTGCTC
ACCACGCCAACCTCAATCTCACTCGCCTTAAAATCCTCTTGCAGGACTGA
TTGCAGGGTGGAAATTGCAGTCTGCACAGTTTCTTGAAAGGTAAACGCAG
GATCATTCTTCATCTTCTTCTCCAAGAAATTAATTGCCTCTTGCTCCTTC
AATCCAGCACTTGTTGCCTTGTGGCCAAAGAAATGGCCAGCAGGGTCACA
CTTAAAGAGGCGAGGTCCACATTCTTCGTCAATACTCAAAACCATAGCAA
CTACACCAAGTGGTCTCATATAAGCATGTTGAGTATATACTTGTGATTTG
TCTGCAATCCATTTGGCTAACACATCCACAGGCATTTCATATCCATATTT
GAAGCGAAACTCAGCGGCTTCATATCTTGCCTGCTGAACCAATGTCCTTG
CATCAGCTGTCATTCCAGTTGCCAGCAATCCAAGGTACTTTGTGATTGGG
AAAAGATGTGTGACACTTGTAT
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