CX672112

Overview
NameCX672112
Unique NameCX672112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672112_ssr658 microsatellite CX672112_ssr658:658..677. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5140 contig Csv1_Contig5140:1..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672112 vs. ExPASy Swiss-Prot
Match: ANL2_ARATH (Homeobox-leucine zipper protein ANTHOCYANINLESS 2 OS=Arabidopsis thaliana GN=ANL2 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.501e-75
Identity = 133/177 (75.14%), Postives = 157/177 (88.70%), Query Frame = 3
Query:    3 VDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFN 533
            VDVSID +RE SG    +  RRLPSGCVVQD+ NGYSKVTWVEHAEYDE+Q+HQLY+PL+ SG+GFG+QRW+ATLQRQCECLAIL+S+SV++ D+T+IT GGR+SMLKLAQRMT NFC+G+ A +VH W+KL  GNVD DVRVMTRKSVDDPGEPPGIVLSAATSVWLP +PQRL++
Sbjct:  465 VDVSIDPVRENSGGAPVI--RRLPSGCVVQDVSNGYSKVTWVEHAEYDENQIHQLYRPLLRSGLGFGSQRWLATLQRQCECLAILISSSVTSHDNTSITPGGRKSMLKLAQRMTFNFCSGISAPSVHNWSKLTVGNVDPDVRVMTRKSVDDPGEPPGIVLSAATSVWLPAAPQRLYD 639          
BLAST of CX672112 vs. ExPASy Swiss-Prot
Match: HDG1_ARATH (Homeobox-leucine zipper protein HDG1 OS=Arabidopsis thaliana GN=HDG1 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 7.215e-70
Identity = 123/178 (69.10%), Postives = 152/178 (85.39%), Query Frame = 3
Query:    3 VDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTA-ITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFN 533
            VDVSID+IRE S +    +CRRLPSGC+VQDM NGYSKVTW+EH EYDE+ +H+LY+PL+  G+ FGA RW+A LQRQCECL ILMS++VS   + + I   GR+SMLKLA+RMTDNFC GVCAS++ KW+KLN GNVDEDVR+MTRKSV++PGEPPGI+L+AATSVW+PVSP+RLF+
Sbjct:  462 VDVSIDSIREGSSS----SCRRLPSGCLVQDMANGYSKVTWIEHTEYDENHIHRLYRPLLRCGLAFGAHRWMAALQRQCECLTILMSSTVSTSTNPSPINCNGRKSMLKLAKRMTDNFCGGVCASSLQKWSKLNVGNVDEDVRIMTRKSVNNPGEPPGIILNAATSVWMPVSPRRLFD 635          
BLAST of CX672112 vs. ExPASy Swiss-Prot
Match: ROC5_ORYSJ (Homeobox-leucine zipper protein ROC5 OS=Oryza sativa subsp. japonica GN=ROC5 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.078e-65
Identity = 124/189 (65.61%), Postives = 154/189 (81.48%), Query Frame = 3
Query:    3 VDVSID-TIRETSGAPA----FVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMST-SVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLN--AGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNVKAD 545
            VDVSID  +R+ +   A     V CRR+PSGCV+QD PNGY KVTWVEH EYDE+ VHQLY+PL+ SG+ FGA+RW+ATLQRQCECLAILMS+ +V+A D TAI+  G+RSMLKLA+RMT+NFCAGV AS+  +W+KL+   G++ EDVRVM RKSV +PGEPPG+VLSAATSVW+PV+P++LFN   D
Sbjct:  461 VDVSIDGLVRDHNSGTAPTGGNVKCRRVPSGCVMQDTPNGYCKVTWVEHTEYDEASVHQLYRPLLRSGLAFGARRWLATLQRQCECLAILMSSATVTANDSTAISQEGKRSMLKLARRMTENFCAGVSASSAREWSKLDGATGSIGEDVRVMARKSVSEPGEPPGVVLSAATSVWVPVAPEKLFNFLRD 649          
BLAST of CX672112 vs. ExPASy Swiss-Prot
Match: ROC4_ORYSJ (Homeobox-leucine zipper protein ROC4 OS=Oryza sativa subsp. japonica GN=ROC4 PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 4.240e-62
Identity = 117/185 (63.24%), Postives = 142/185 (76.76%), Query Frame = 3
Query:    3 VDVSIDTIRETSG-----APAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMST-SVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKL--NAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFN 533
            VDVS D +    G     + A +NCRRLPSGCV+QD PNG+ KVTWVEH EYDE+ VH LY+PL+ SG+  GA RW+ATLQRQCECLA+LMS+ ++   D +AI   G+RSMLKLA+RMTDNFCAGV  S+  +W+KL    GN+ EDV VM RKSVD+PG PPG+VLSAATSVW+PV P+RLFN
Sbjct:  471 VDVSADELMRDQGITSASSTANMNCRRLPSGCVLQDTPNGFVKVTWVEHTEYDEASVHPLYRPLLRSGLALGAGRWIATLQRQCECLALLMSSIALPENDSSAIHPEGKRSMLKLARRMTDNFCAGVSTSSTREWSKLVGLTGNIGEDVHVMARKSVDEPGTPPGVVLSAATSVWMPVMPERLFN 655          
BLAST of CX672112 vs. ExPASy Swiss-Prot
Match: ROC6_ORYSJ (Homeobox-leucine zipper protein ROC6 OS=Oryza sativa subsp. japonica GN=ROC6 PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.843e-57
Identity = 115/202 (56.93%), Postives = 140/202 (69.31%), Query Frame = 3
Query:    3 VDVSIDTIRET-------SGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLN-------------AGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNVKAD 545
            VDVS+D +          S + +++ CR LP+GC+VQDM NGYSKVTWV HAEYDE+  HQLY+PL+ SG   GA+RW+A+LQRQC+ LAIL S S+ ARDH AIT  GRRSMLKLAQRMTDNFCAGVCAS   KW +L+              G+ ++ VR+M R SV  PGEPPG+VLSA TSV LP   PQR+F+   D
Sbjct:  493 VDVSVDAVLRPDQNGGGGSSSSSYMGCRLLPTGCIVQDMNNGYSKVTWVVHAEYDETAAHQLYRPLLRSGQALGARRWLASLQRQCQYLAILCSNSLPARDHAAITPVGRRSMLKLAQRMTDNFCAGVCASAAQKWRRLDEWRGEGGGGGGGGGGDGEDKVRMMARHSVGAPGEPPGVVLSATTSVRLPGTLPQRVFDYLRD 694          
BLAST of CX672112 vs. ExPASy Swiss-Prot
Match: ROC7_ORYSI (Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. indica GN=ROC7 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.195e-56
Identity = 112/187 (59.89%), Postives = 138/187 (73.80%), Query Frame = 3
Query:    3 VDVSIDTIRETSGA----PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI--TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNVKAD 545
            VDVS+D +R  +G      A    RR PSGC++Q+MPNGYSKVTWVEH E D+  VH LYKP++ SGM FGA+RWVATL+RQCE LA  M+++V++     +  T+ GRRSMLKLA+RM  +FC GV AST H+W  L +G+  EDVRVMTRKSVDDPG PPGIVL+AATS WLPV P R+F+   D
Sbjct:  407 VDVSLDGLRAGAGGGCQPAAARGHRRRPSGCLIQEMPNGYSKVTWVEHVEADDQMVHNLYKPVVNSGMAFGARRWVATLERQCERLASAMASNVASSGDAGVITTSEGRRSMLKLAERMVASFCGGVTASTTHQWTTL-SGSGAEDVRVMTRKSVDDPGRPPGIVLNAATSFWLPVPPSRVFDFLRD 592          
BLAST of CX672112 vs. ExPASy Swiss-Prot
Match: ROC7_ORYSJ (Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. japonica GN=ROC7 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.560e-56
Identity = 111/187 (59.36%), Postives = 138/187 (73.80%), Query Frame = 3
Query:    3 VDVSIDTIRETSGA----PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI--TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNVKAD 545
            VDVS+D +R  +G      A    RR PSGC++Q+MPNGYSKVTWVEH E D+  VH LYKP++ SGM FGA+RWVATL+RQCE LA  M+++V++     +  T+ GRRSMLKLA+RM  +FC GV AST H+W  L +G+  EDVRVMTRKSVDDPG PPGI+L+AATS WLPV P R+F+   D
Sbjct:  407 VDVSLDGLRAGAGGGCQPAAARGHRRRPSGCLIQEMPNGYSKVTWVEHVEADDQMVHNLYKPVVNSGMAFGARRWVATLERQCERLASAMASNVASSGDAGVITTSEGRRSMLKLAERMVASFCGGVTASTTHQWTTL-SGSGAEDVRVMTRKSVDDPGRPPGIILNAATSFWLPVPPSRVFDFLRD 592          
BLAST of CX672112 vs. ExPASy Swiss-Prot
Match: ROC2_ORYSJ (Homeobox-leucine zipper protein ROC2 OS=Oryza sativa subsp. japonica GN=ROC2 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.321e-55
Identity = 107/182 (58.79%), Postives = 136/182 (74.73%), Query Frame = 3
Query:    3 VDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAG-GRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNVKAD 545
            VDVS+D++R +      + CRR PSGC++Q+MPNGYSKVTWVEH E D+  VH +YK L+ SG+ FGA+RWV TL RQCE LA +M++++   D   IT+  GR+SMLKLA+RM  +FC GV AS  H+W  L +G+  EDVRVMTRKSVDDPG PPGIVL+AATS WLPV P+R+F+   D
Sbjct:  444 VDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCERLASVMASNIPTSDIGVITSSEGRKSMLKLAERMVVSFCGGVTASVAHQWTTL-SGSGAEDVRVMTRKSVDDPGRPPGIVLNAATSFWLPVPPKRVFDFLRD 620          
BLAST of CX672112 vs. ExPASy Swiss-Prot
Match: ROC1_ORYSJ (Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica GN=ROC1 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.253e-55
Identity = 108/182 (59.34%), Postives = 134/182 (73.63%), Query Frame = 3
Query:    3 VDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITA-GGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNVKAD 545
            VDVS+D++R +        CRR PSGC++Q+MPNGYSKVTWVEH E D+S VH +YKPL+ SG+ FGA+RWV TL RQCE LA  M++++   D   IT+  GR+SMLKLA+RM  +FC GV AS  H+W  L +G+  EDVRVMTRKSVDDPG PPGIVL+AATS WLPV P  +F+   D
Sbjct:  443 VDVSLDSLRPSP----VQKCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDSSVHNIYKPLVNSGLAFGAKRWVGTLDRQCERLASAMASNIPNGDLGVITSVEGRKSMLKLAERMVASFCGGVTASVAHQWTTL-SGSGAEDVRVMTRKSVDDPGRPPGIVLNAATSFWLPVPPAAVFDFLRD 619          
BLAST of CX672112 vs. ExPASy Swiss-Prot
Match: PDF2_ARATH (Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.250e-54
Identity = 101/181 (55.80%), Postives = 135/181 (74.59%), Query Frame = 3
Query:    3 VDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNVKAD 545
            VDVS+D++R ++     +  RR PSGC++Q++PNGYSKVTW+EH E D+  VH +YKPL+ SG+ FGA+RWVATL+RQCE LA  M++++        +  GR+SMLKLA+RM  +FC+GV AST H W  ++    D DVRVMTRKS+DDPG PPGIVLSAATS W+PV+P+R+F+   D
Sbjct:  396 VDVSLDSLRPST---PILRTRRRPSGCLIQELPNGYSKVTWIEHMEVDDRSVHNMYKPLVQSGLAFGAKRWVATLERQCERLASSMASNIPGDLSVITSPEGRKSMLKLAERMVMSFCSGVGASTAHAWTTMSTTGSD-DVRVMTRKSMDDPGRPPGIVLSAATSFWIPVAPKRVFDFLRD 572          
The following BLAST results are available for this feature:
BLAST of CX672112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
ANL2_ARATH1.501e-7575.14Homeobox-leucine zipper protein ANTHOCYANINLESS 2 ... [more]
HDG1_ARATH7.215e-7069.10Homeobox-leucine zipper protein HDG1 OS=Arabidopsi... [more]
ROC5_ORYSJ1.078e-6565.61Homeobox-leucine zipper protein ROC5 OS=Oryza sati... [more]
ROC4_ORYSJ4.240e-6263.24Homeobox-leucine zipper protein ROC4 OS=Oryza sati... [more]
ROC6_ORYSJ1.843e-5756.93Homeobox-leucine zipper protein ROC6 OS=Oryza sati... [more]
ROC7_ORYSI1.195e-5659.89Homeobox-leucine zipper protein ROC7 OS=Oryza sati... [more]
ROC7_ORYSJ1.560e-5659.36Homeobox-leucine zipper protein ROC7 OS=Oryza sati... [more]
ROC2_ORYSJ1.321e-5558.79Homeobox-leucine zipper protein ROC2 OS=Oryza sati... [more]
ROC1_ORYSJ2.253e-5559.34Homeobox-leucine zipper protein ROC1 OS=Oryza sati... [more]
PDF2_ARATH4.250e-5455.80Homeobox-leucine zipper protein PROTODERMAL FACTOR... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_15A10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15A10-B19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672112 ID=CX672112; Name=CX672112; organism=Citrus sinensis; type=EST; length=775bp
TCGTTGATGTTTCCATTGACACCATCCGAGAAACTTCTGGTGCTCCAGCT
TTTGTTAATTGTAGGAGGCTTCCTTCTGGCTGTGTTGTGCAAGACATGCC
TAATGGCTACTCAAAGGTGACATGGGTTGAGCATGCAGAATACGATGAAA
GCCAAGTCCACCAACTCTACAAACCCTTGATAATCTCCGGAATGGGCTTC
GGCGCCCAACGGTGGGTCGCCACCCTTCAAAGACAATGCGAGTGCCTAGC
CATTCTCATGTCCACCAGCGTCTCCGCCAGAGATCACACCGCAATAACTG
CGGGTGGGCGACGAAGCATGTTGAAGCTAGCACAGAGAATGACTGATAAT
TTCTGCGCTGGGGTGTGCGCTTCAACTGTCCACAAATGGAACAAGCTCAA
TGCTGGCAATGTCGATGAAGACGTTAGGGTTATGACCAGAAAGAGCGTTG
ACGATCCCGGTGAGCCTCCAGGAATCGTGTTAAGCGCTGCCACCTCCGTT
TGGCTGCCGGTGTCTCCTCAAAGACTCTTCAATGTGAAAGCTGATACGAT
AATGGAGTTGGTGTTTGGTTTTTTAACTTGACACGATGGGGTGTTTTGCT
TTGTGCATGGCTACGGTTAATTGTAGCTAATCACGTGGCTTGTGAATTGT
GGTGAACAGAGAGAGAGAGAGAGAGAGACAGCTTTGGTACGTGGGCGCGT
GTGACAGTGTGTTTGCTTTGCTTCCGGGGTGTTGAGTCAAGAACGAACCG
CGCGTGGAAACTCCTTGCATGGTGA
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