CX672111

Overview
NameCX672111
Unique NameCX672111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672111_ssr291 microsatellite CX672111_ssr291:291..310. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5140 contig Csv1_Contig5140:92..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672111 vs. ExPASy Swiss-Prot
Match: ANL2_ARATH (Homeobox-leucine zipper protein ANTHOCYANINLESS 2 OS=Arabidopsis thaliana GN=ANL2 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.057e-65
Identity = 113/147 (76.87%), Postives = 135/147 (91.84%), Query Frame = -2
Query:  436 DMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFN 876
            D+ NGYSKVTWVEHAEYDE+Q+HQLY+PL+ SG+GFG+QRW+ATLQRQCECLAIL+S+SV++ D+T+IT GGR+SMLKLAQRMT NFC+G+ A +VH W+KL  GNVD DVRVMTRKSVDDPGEPPGIVLSAATSVWLP +PQRL++
Sbjct:  493 DVSNGYSKVTWVEHAEYDENQIHQLYRPLLRSGLGFGSQRWLATLQRQCECLAILISSSVTSHDNTSITPGGRKSMLKLAQRMTFNFCSGISAPSVHNWSKLTVGNVDPDVRVMTRKSVDDPGEPPGIVLSAATSVWLPAAPQRLYD 639          
BLAST of CX672111 vs. ExPASy Swiss-Prot
Match: HDG1_ARATH (Homeobox-leucine zipper protein HDG1 OS=Arabidopsis thaliana GN=HDG1 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.175e-59
Identity = 103/148 (69.59%), Postives = 128/148 (86.49%), Query Frame = -2
Query:  436 DMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTA-ITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFN 876
            DM NGYSKVTW+EH EYDE+ +H+LY+PL+  G+ FGA RW+A LQRQCECL ILMS++VS   + + I   GR+SMLKLA+RMTDNFC GVCAS++ KW+KLN GNVDEDVR+MTRKSV++PGEPPGI+L+AATSVW+PVSP+RLF+
Sbjct:  488 DMANGYSKVTWIEHTEYDENHIHRLYRPLLRCGLAFGAHRWMAALQRQCECLTILMSSTVSTSTNPSPINCNGRKSMLKLAKRMTDNFCGGVCASSLQKWSKLNVGNVDEDVRIMTRKSVNNPGEPPGIILNAATSVWMPVSPRRLFD 635          
BLAST of CX672111 vs. ExPASy Swiss-Prot
Match: ROC5_ORYSJ (Homeobox-leucine zipper protein ROC5 OS=Oryza sativa subsp. japonica GN=ROC5 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.334e-57
Identity = 106/154 (68.83%), Postives = 131/154 (85.06%), Query Frame = -2
Query:  424 DMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMST-SVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLN--AGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNVKAD 876
            D PNGY KVTWVEH EYDE+ VHQLY+PL+ SG+ FGA+RW+ATLQRQCECLAILMS+ +V+A D TAI+  G+RSMLKLA+RMT+NFCAGV AS+  +W+KL+   G++ EDVRVM RKSV +PGEPPG+VLSAATSVW+PV+P++LFN   D
Sbjct:  496 DTPNGYCKVTWVEHTEYDEASVHQLYRPLLRSGLAFGARRWLATLQRQCECLAILMSSATVTANDSTAISQEGKRSMLKLARRMTENFCAGVSASSAREWSKLDGATGSIGEDVRVMARKSVSEPGEPPGVVLSAATSVWVPVAPEKLFNFLRD 649          
BLAST of CX672111 vs. ExPASy Swiss-Prot
Match: ROC4_ORYSJ (Homeobox-leucine zipper protein ROC4 OS=Oryza sativa subsp. japonica GN=ROC4 PE=2 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 7.574e-53
Identity = 99/150 (66.00%), Postives = 120/150 (80.00%), Query Frame = -2
Query:  436 DMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMST-SVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKL--NAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFN 876
            D PNG+ KVTWVEH EYDE+ VH LY+PL+ SG+  GA RW+ATLQRQCECLA+LMS+ ++   D +AI   G+RSMLKLA+RMTDNFCAGV  S+  +W+KL    GN+ EDV VM RKSVD+PG PPG+VLSAATSVW+PV P+RLFN
Sbjct:  506 DTPNGFVKVTWVEHTEYDEASVHPLYRPLLRSGLALGAGRWIATLQRQCECLALLMSSIALPENDSSAIHPEGKRSMLKLARRMTDNFCAGVSTSSTREWSKLVGLTGNIGEDVHVMARKSVDEPGTPPGVVLSAATSVWMPVMPERLFN 655          
BLAST of CX672111 vs. ExPASy Swiss-Prot
Match: ROC7_ORYSI (Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. indica GN=ROC7 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.837e-50
Identity = 97/153 (63.40%), Postives = 118/153 (77.12%), Query Frame = -2
Query:  424 DMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI--TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNVKAD 876
            +MPNGYSKVTWVEH E D+  VH LYKP++ SGM FGA+RWVATL+RQCE LA  M+++V++     +  T+ GRRSMLKLA+RM  +FC GV AST H+W  L +G+  EDVRVMTRKSVDDPG PPGIVL+AATS WLPV P R+F+   D
Sbjct:  441 EMPNGYSKVTWVEHVEADDQMVHNLYKPVVNSGMAFGARRWVATLERQCERLASAMASNVASSGDAGVITTSEGRRSMLKLAERMVASFCGGVTASTTHQWTTL-SGSGAEDVRVMTRKSVDDPGRPPGIVLNAATSFWLPVPPSRVFDFLRD 592          
BLAST of CX672111 vs. ExPASy Swiss-Prot
Match: ROC7_ORYSJ (Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. japonica GN=ROC7 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.024e-49
Identity = 96/153 (62.75%), Postives = 118/153 (77.12%), Query Frame = -2
Query:  424 DMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI--TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNVKAD 876
            +MPNGYSKVTWVEH E D+  VH LYKP++ SGM FGA+RWVATL+RQCE LA  M+++V++     +  T+ GRRSMLKLA+RM  +FC GV AST H+W  L +G+  EDVRVMTRKSVDDPG PPGI+L+AATS WLPV P R+F+   D
Sbjct:  441 EMPNGYSKVTWVEHVEADDQMVHNLYKPVVNSGMAFGARRWVATLERQCERLASAMASNVASSGDAGVITTSEGRRSMLKLAERMVASFCGGVTASTTHQWTTL-SGSGAEDVRVMTRKSVDDPGRPPGIILNAATSFWLPVPPSRVFDFLRD 592          
BLAST of CX672111 vs. ExPASy Swiss-Prot
Match: ROC6_ORYSJ (Homeobox-leucine zipper protein ROC6 OS=Oryza sativa subsp. japonica GN=ROC6 PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 2.280e-49
Identity = 101/165 (61.21%), Postives = 118/165 (71.52%), Query Frame = -2
Query:  424 DMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLN-------------AGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNVKAD 876
            DM NGYSKVTWV HAEYDE+  HQLY+PL+ SG   GA+RW+A+LQRQC+ LAIL S S+ ARDH AIT  GRRSMLKLAQRMTDNFCAGVCAS   KW +L+              G+ ++ VR+M R SV  PGEPPG+VLSA TSV LP   PQR+F+   D
Sbjct:  530 DMNNGYSKVTWVVHAEYDETAAHQLYRPLLRSGQALGARRWLASLQRQCQYLAILCSNSLPARDHAAITPVGRRSMLKLAQRMTDNFCAGVCASAAQKWRRLDEWRGEGGGGGGGGGGDGEDKVRMMARHSVGAPGEPPGVVLSATTSVRLPGTLPQRVFDYLRD 694          
BLAST of CX672111 vs. ExPASy Swiss-Prot
Match: ROC1_ORYSJ (Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica GN=ROC1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.634e-47
Identity = 94/152 (61.84%), Postives = 114/152 (75.00%), Query Frame = -2
Query:  424 DMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITA-GGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNVKAD 876
            +MPNGYSKVTWVEH E D+S VH +YKPL+ SG+ FGA+RWV TL RQCE LA  M++++   D   IT+  GR+SMLKLA+RM  +FC GV AS  H+W  L +G+  EDVRVMTRKSVDDPG PPGIVL+AATS WLPV P  +F+   D
Sbjct:  469 EMPNGYSKVTWVEHVEVDDSSVHNIYKPLVNSGLAFGAKRWVGTLDRQCERLASAMASNIPNGDLGVITSVEGRKSMLKLAERMVASFCGGVTASVAHQWTTL-SGSGAEDVRVMTRKSVDDPGRPPGIVLNAATSFWLPVPPAAVFDFLRD 619          
BLAST of CX672111 vs. ExPASy Swiss-Prot
Match: ROC2_ORYSJ (Homeobox-leucine zipper protein ROC2 OS=Oryza sativa subsp. japonica GN=ROC2 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.134e-47
Identity = 93/152 (61.18%), Postives = 115/152 (75.66%), Query Frame = -2
Query:  424 DMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAG-GRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNVKAD 876
            +MPNGYSKVTWVEH E D+  VH +YK L+ SG+ FGA+RWV TL RQCE LA +M++++   D   IT+  GR+SMLKLA+RM  +FC GV AS  H+W  L +G+  EDVRVMTRKSVDDPG PPGIVL+AATS WLPV P+R+F+   D
Sbjct:  470 EMPNGYSKVTWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCERLASVMASNIPTSDIGVITSSEGRKSMLKLAERMVVSFCGGVTASVAHQWTTL-SGSGAEDVRVMTRKSVDDPGRPPGIVLNAATSFWLPVPPKRVFDFLRD 620          
BLAST of CX672111 vs. ExPASy Swiss-Prot
Match: HDG2_ARATH (Homeobox-leucine zipper protein HDG2 OS=Arabidopsis thaliana GN=HDG2 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.788e-47
Identity = 95/152 (62.50%), Postives = 115/152 (75.66%), Query Frame = -2
Query:  424 DMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAIT-AGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNVKAD 876
            ++PNGYSKVTWVEH E D+  VH LYK ++ +G  FGA+RWVA L RQCE LA +M+T++S+ +   IT   GRRSMLKLA+RM  +FCAGV AST H W  L +G   EDVRVMTRKSVDDPG PPGIVLSAATS W+PV P+R+F+   D
Sbjct:  415 ELPNGYSKVTWVEHVEVDDRGVHNLYKHMVSTGHAFGAKRWVAILDRQCERLASVMATNISSGEVGVITNQEGRRSMLKLAERMVISFCAGVSASTAHTWTTL-SGTGAEDVRVMTRKSVDDPGRPPGIVLSAATSFWIPVPPKRVFDFLRD 565          
The following BLAST results are available for this feature:
BLAST of CX672111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
ANL2_ARATH5.057e-6576.87Homeobox-leucine zipper protein ANTHOCYANINLESS 2 ... [more]
HDG1_ARATH3.175e-5969.59Homeobox-leucine zipper protein HDG1 OS=Arabidopsi... [more]
ROC5_ORYSJ1.334e-5768.83Homeobox-leucine zipper protein ROC5 OS=Oryza sati... [more]
ROC4_ORYSJ7.574e-5366.00Homeobox-leucine zipper protein ROC4 OS=Oryza sati... [more]
ROC7_ORYSI7.837e-5063.40Homeobox-leucine zipper protein ROC7 OS=Oryza sati... [more]
ROC7_ORYSJ1.024e-4962.75Homeobox-leucine zipper protein ROC7 OS=Oryza sati... [more]
ROC6_ORYSJ2.280e-4961.21Homeobox-leucine zipper protein ROC6 OS=Oryza sati... [more]
ROC1_ORYSJ1.634e-4761.84Homeobox-leucine zipper protein ROC1 OS=Oryza sati... [more]
ROC2_ORYSJ2.134e-4761.18Homeobox-leucine zipper protein ROC2 OS=Oryza sati... [more]
HDG2_ARATH2.788e-4762.50Homeobox-leucine zipper protein HDG2 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_15A10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15A10-B19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672111 ID=CX672111; Name=CX672111; organism=Citrus sinensis; type=EST; length=877bp
TTTTTTTTTTTTTTTTTAAACCGAAAGCAAATAGTTAAATTTAAATTGCA
CAAAGGAATACTTCAAACTTCATTTCAGTTTTGTTTTTTTGACAATTCAT
AAAGGGGTTGACCTGAGTCAATACCCGAACCACCACCCTTGCCTTGTGTT
AAGAATAGTCTCTGCTCGAGTCCGTGACTCAGCCCCATCCTCATCACCAT
GCAAGGAGTTTCCACGCGCGGTTCGTTCTTGACTCAACACCCCCGAAGCA
AAGCAAACACACTGTCACACGCGCCCACGTACCAAAGCTGTCTCTCTCTC
TCTCTCTCTCTGTTCACCACAATTCACAAGCCACGTGATTAGCTACAATT
AACCGTAGCCATGCACAAAGCAAAACACCCCATCGTGTCAAGTTAAAAAA
CCAAACACCAACTCCATTATCGTATCAGCTTTCACATTGAAGAGTCTTTG
AGGAGACACCGGCAGCCAAACGGAGGTGGCAGCGCTTAACACGATTCCTG
GAGGCTCACCGGGATCGTCAACGCTCTTTCTGGTCATAACCCTAACGTCT
TCATCGACATTGCCAGCATTGAGCTTGTTCCATTTGTGGACAGTTGAAGC
GCACACCCCAGCGCAGAAATTATCAGTCATTCTCTGTGCTAGCTTCAACA
TGCTTCGTCGCCCACCCGCAGTTATTGCGGTGTGATCTCTGGCGGAGACG
CTGGTGGACATGAGAATGGCTAGGCACTCGCATTGTCTTTGAAGGGTGGC
GACCCACCGTTGGGCGCCGAAGCCCATTCCGGAGATTATCAAGGGTTTGT
AGAGTTGGTGGACTTGGCTTTCATCGTATTCTGCATGCTCAACCCATGTC
ACCTTTGAGTAGCCATTAGGCATGTCT
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