CX672099

Overview
NameCX672099
Unique NameCX672099
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length171
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672099_ssr7 microsatellite CX672099_ssr7:7..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX672099 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.719e-15
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 3 
Query:   39 MATPSTKPTPLLKHELDIVIPTIRNLDFLEMWRPFFEPYHLIIV 170
            MA  S  PTPLLK ELDIVIPTIRNLDFLEMWRPFF+PYHLIIV
Sbjct:    1 MAGSSVTPTPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIV 44
[Close]
BLAST of CX672099 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.901e-14
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 3 
Query:   57 KPTPLLKHELDIVIPTIRNLDFLEMWRPFFEPYHLIIV 170
            KPTPLLK ELDIVIPTIRNLDFLEMWRPFFE YHLIIV
Sbjct:    6 KPTPLLKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIV 43
[Close]
BLAST of CX672099 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.232e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:   63 TPLLKHELDIVIPTIRNLDFLEMWRPFFEPYHLIIV 170
            TPLLK ELDIVIPTIRNLDFLEMWRPFF+PYHLIIV
Sbjct:    5 TPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIV 40
[Close]
BLAST of CX672099 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.609e-13
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 3 
Query:   51 STKPTPLLKHELDIVIPTIRNLDFLEMWRPFFEPYHLIIV 170
            ST  TPLLK ELDIVIPTIRNLDFLEMWR FF+PYHLIIV
Sbjct:   11 STPSTPLLKDELDIVIPTIRNLDFLEMWRAFFQPYHLIIV 50
The following BLAST results are available for this feature:
BLAST of CX672099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UPTG2_SOLTU1.719e-1586.36Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
UPTG_PEA1.901e-1494.74Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG1_SOLTU1.232e-1394.44Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ... [more]
UPTG_MAIZE1.609e-1387.50Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14H11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14H11-O22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672099 ID=CX672099; Name=CX672099; organism=Citrus sinensis; type=EST; length=171bp
CGGAAGTCTCTCTCTCATTTTGTCTCAAATTTTTGAAGATGGCAACTCCT
TCAACAAAGCCAACGCCACTGCTGAAACACGAGCTGGATATCGTGATACC
GACGATTCGAAACTTGGATTTCTTGGAGATGTGGAGGCCATTTTTTGAGC
CGTATCATTTGATCATCGTAC
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