EG358327

Overview
NameEG358327
Unique NameEG358327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EG358327_ssr469 microsatellite EG358327_ssr469:469..480. BLAST: Citrus ESTs to Prunus persica proteins V1
EG358327_ssr177 microsatellite EG358327_ssr177:177..188. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EG358327 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 7.761e-49
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1
Query:  124 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 393
            YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL
Sbjct:  421 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 510          
BLAST of EG358327 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.773e-30
Identity = 59/90 (65.56%), Postives = 75/90 (83.33%), Query Frame = 1
Query:  124 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 393
            YSRTV++KT LDSLI+P GW+EW G+FAL TL+YAE+ NTGPG+ST+ RV W G+ VL S S+ S+FTVG F+AG SW+P ++VPFTSGL
Sbjct:  423 YSRTVFMKTSLDSLIDPRGWLEWDGNFALKTLFYAEFQNTGPGASTSGRVTWPGFRVLGSASEASKFTVGTFLAGGSWIP-SSVPFTSGL 511          
BLAST of EG358327 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.390e-28
Identity = 51/91 (56.04%), Postives = 69/91 (75.82%), Query Frame = 1
Query:  121 LYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 393
            LYSRTV+++ ++   INP GW+EW+G+FAL+TLYY EYMN+GPG+S   RVKW GYHVL + ++ + FTV   I GN WLP+T + F +GL
Sbjct:  435 LYSRTVFMQNYMSDAINPVGWLEWNGNFALDTLYYGEYMNSGPGASLDRRVKWPGYHVLNTSAEANNFTVSQLIQGNLWLPSTGITFIAGL 525          
BLAST of EG358327 vs. ExPASy Swiss-Prot
Match: PME36_ARATH (Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.782e-28
Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = 1
Query:  124 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 393
            YSRTV++KT +D LI+P GW EWSG +AL+TLYY E+MNTG G+ T  RV W G+HVL    + S FTV  FI G+SW+P T VPF++G+
Sbjct:  430 YSRTVFLKTDIDELIDPRGWREWSGSYALSTLYYGEFMNTGAGAGTGRRVNWPGFHVLRGEEEASPFTVSRFIQGDSWIPITGVPFSAGV 519          
BLAST of EG358327 vs. ExPASy Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 123.635 bits (309), Expect = 5.782e-28
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 1
Query:  124 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 393
            YSRTV ++++L  LINPAGW EW GDFAL TLYY E+MN GPG+ T+ RVKW GYHV+T P++   FTV   I G SWL +T V +  GL
Sbjct:  455 YSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL 544          
BLAST of EG358327 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.552e-28
Identity = 54/85 (63.53%), Postives = 68/85 (80.00%), Query Frame = 1
Query:  124 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVP 378
            YSRTV++ + ++SLI+PAGW+EWSGDFAL TLYY EY NTGPGS+T  RV W GY V T+ ++V QFTVGNFI G+ WL + N+P
Sbjct:  231 YSRTVFLLSQMESLIDPAGWLEWSGDFALTTLYYREYKNTGPGSNTTARVTWPGYAVTTNETEVIQFTVGNFIQGSQWLTSYNIP 315          
BLAST of EG358327 vs. ExPASy Swiss-Prot
Match: PME22_SOLLC (Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.682e-27
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 1
Query:  124 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 393
            YSRTV ++++L  LINPAGW EW GDFAL TLYY E+MN GPG+ T+ RVKW GYH +T P++   FTV   I G SWL +T V +  GL
Sbjct:  459 YSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHCITDPAEAMPFTVAKLIQGGSWLRSTGVAYVDGL 548          
BLAST of EG358327 vs. ExPASy Swiss-Prot
Match: PME40_ARATH (Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.870e-27
Identity = 52/91 (57.14%), Postives = 68/91 (74.73%), Query Frame = 1
Query:  121 LYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 393
            LYSRTV +K+F+D L++PAGW++W  DFAL TLYY EYMN GPGS+  NRV+W G+  + +  + SQF+VG FI GN WL +T +PFT  L
Sbjct:  428 LYSRTVIMKSFIDDLVDPAGWLKWKDDFALETLYYGEYMNEGPGSNMTNRVQWPGFKRIETVEEASQFSVGPFIDGNKWLNSTRIPFTLDL 518          
BLAST of EG358327 vs. ExPASy Swiss-Prot
Match: PME21_SOLLC (Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 2.870e-27
Identity = 51/90 (56.67%), Postives = 66/90 (73.33%), Query Frame = 1
Query:  124 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 393
            YSRTV ++++L  LI+P+GW EW GDFAL TLYY E+MN GPG+ T+ RVKW GYHV+T P++   FTV   I G SWL +T+V +  GL
Sbjct:  459 YSRTVVMESYLGGLIDPSGWAEWHGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAEAMSFTVAKLIQGGSWLRSTDVAYVDGL 548          
BLAST of EG358327 vs. ExPASy Swiss-Prot
Match: PME20_ARATH (Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 2.870e-27
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 1
Query:  124 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 393
            YSRTV ++T++D  + P+GW  WSGDFAL+TLYYAEY NTGPGS T NRV W GYHV+ + +  S FTV NF+ G  W+  T VPF  GL
Sbjct:  470 YSRTVVMQTYIDGFLEPSGWNAWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHVINA-TDASNFTVTNFLVGEGWIGQTGVPFVGGL 558          
The following BLAST results are available for this feature:
BLAST of EG358327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
PME2_CITSI7.761e-49100.00Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME17_ARATH2.773e-3065.56Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME32_ARATH3.390e-2856.04Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME36_ARATH5.782e-2857.78Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME1_SOLLC5.782e-2858.89Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9... [more]
PME_ACTDE7.552e-2863.53Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]
PME22_SOLLC1.682e-2757.78Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2... [more]
PME40_ARATH2.870e-2757.14Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME21_SOLLC2.870e-2756.67Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2... [more]
PME20_ARATH2.870e-2758.89Probable pectinesterase/pectinesterase inhibitor 2... [more]

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Properties
Property NameValue
Genbank description13d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0013d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358327 ID=EG358327; Name=EG358327; organism=Citrus sinensis; type=EST; length=539bp
ACATGTAGTCCGGCAAATTTTTGAGATTTCAAGTTCAAATTGGTTTTGCA
GCAGAGCACATCATAGTATAGAATTGTATAAGTGATATGTATTTTCTTGG
ATATGGAGGGTTTTGTCCTCTTGTACTCGCGAACCGTTTATATCAAGACC
TTCCTTGACAGCTTGATAAACCCCGCTGGATGGATGGAATGGAGTGGTGA
TTTTGCTTTGAATACTCTGTATTATGCTGAGTATATGAACACTGGCCCGG
GTTCTTCAACTGCTAACAGAGTCAAGTGGCGTGGCTATCACGTTCTTACC
AGTCCGTCCCAGGTTAGCCAGTTCACCGTAGGCAACTTTATTGCTGGAAA
TTCTTGGTTGCCGGCCACCAACGTCCCCTTCACCTCCGGTCTCTAGGTTG
ATCATTCTTTGTTTATATTTTATTGCACATGAAATTAATACCAACTTGTT
GAGGTAATTAGGAGGAAAAATAATAATAATAAGGTAGTTAAAAGGAACTA
CCATCTTGGCATTGTCAGTTGTTATTCTTTGTGAAGTTG
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