CX672096

Overview
NameCX672096
Unique NameCX672096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5137 contig Csv1_Contig5137:1..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX672096 vs. ExPASy Swiss-Prot
Match: Y1934_ARATH (Uncharacterized protein At1g09340, chloroplastic OS=Arabidopsis thaliana GN=At1g09340 PE=1 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 6.600e-106
Identity = 178/199 (89.45%), Postives = 191/199 (95.98%), Query Frame = -2 
Query:  200 AVDPKSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYNLDFGRSTYRKEADFSTDDMILGKKLVLQ 796
            AVDPKSRHKGKL TES+L+SKGVNWTS+RPVYIYGPLNYNPVEEWFFHRLKAGRPIP+P SGIQ++QLGHVKDLA AF+ VLGNEKASR++FNISGEKYVTFDGLA+ACAKA GFPEPE+VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGL DSYNLDFGR T+RKEADF+TDDMIL KKLVLQ
Sbjct:  180 AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLVLQ 378
[Close]
BLAST of CX672096 vs. ExPASy Swiss-Prot
Match: Y3314_ARATH (Uncharacterized protein At3g63140, chloroplastic OS=Arabidopsis thaliana GN=At3g63140 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.561e-33
Identity = 78/186 (41.94%), Postives = 105/186 (56.45%), Query Frame = -2 
Query:  221 GKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGN-EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN--LDFGRSTYRKEADFSTDDMIL 769
            G +  E  L     NW S RP Y+ G  N    EEWFF R+   R +PIPGSG+Q+T + HV+DL+      + N E AS  +FN   ++ VT DG+A+ CA AAG    E+VHY+PK      KKAF FR+ HF+A    AK +LGW+ + +L E L + +   +  GR   +KE  F  DD IL
Sbjct:  215 GHVVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAG-KTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLGWESKTNLPEDLKERFEEYVKIGRD--KKEIKFELDDKIL 397
The following BLAST results are available for this feature:
BLAST of CX672096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y1934_ARATH6.600e-10689.45Uncharacterized protein At1g09340, chloroplastic O... [more]
Y3314_ARATH2.561e-3341.94Uncharacterized protein At3g63140, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14H09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14H09-O18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672096 ID=CX672096; Name=CX672096; organism=Citrus sinensis; type=EST; length=797bp
TTTTTTTTTTCGAGAAAATGACTTGCATTGATTTATTAATTCTCATACAA
GGTTTACGATACATGTGGAACTCAAATATTTTCAGTTGAAACCATAAACC
ACGAACAGTAGGCAGCCTAGAGCTTGGATGAAAATGATCAACGAAGTAAC
TGTAAGGAGGAAAAAAAAAAACCCTAGGAAATGTGTGAATGAACTAGGCC
TGAAGAACGAGTTTCTTGCCGAGAATCATGTCATCTGTGGAGAAATCAGC
CTCTTTCCTGTATGTACTCCTGCCAAAGTCTAGGTTGTATGAGTCTGCAA
GACCTTCCACCAGGTCAAACTCAGGTTTCCATCCGAGCACATGCTTTGCC
TTCTCAACTGACGCAAAGAAATGCTGGTCCCTGAATGGAAAAGCCTTCTT
TTTACCAAAGTCAAACTCTTTGGGGTTGTAGTGCACAAGTTCAGGCTCAG
GAAAGCCAGCAGCCTTTGCACATGCCCTGGCTAATCCATCAAAGGTGACA
TACTTCTCTCCTGAGATGTTGAATACCTGCCTGCTGGCTTTTTCATTGCC
AAGAACCTGAACAAAGGCCCTAGCCAAGTCCTTTACATGACCAAGCTGGG
TTACTTGTATTCCGGAGCCTGGGATTGGAATTGGGCGACCTGCTTTCAAA
CGGTGGAAGAACCACTCTTCAACAGGGTTGTAGTTCAAGGGACCATATAT
ATAGACTGGCCTTAAAGAAGTCCAGTTCACGCCTTTTGATTCCAGTACGG
ACTCTGTATTAAGCTTTCCCTTGTGCCTGCTCTTTGGATCAACAGCG
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