CX672093

Overview
NameCX672093
Unique NameCX672093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX672093 vs. ExPASy Swiss-Prot
Match: PP199_ARATH (Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 9.581e-79
Identity = 140/214 (65.42%), Postives = 169/214 (78.97%), Query Frame = 1 
Query:   73 SNAKRKPKPDPSSPFKGRRSGFVDYDKGQHEVSTQVSGLRKSDIPRRHRLAVEGNRFQKDWSVSEVVERVLALKYYEDVEGVLNRWVGRFARKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVTWSWSTLNFIYLTSNQNLCG 714
            S A +      S  F+ ++S  V+YD+G+HEVS  + GLRK+DIPRR+R+ VE +RFQKDWSVSEVV+R++AL  +E+V+GVLN WVGRFARKNFP LI+E+++RG I     VF WMK QKNYCARNDIYNMMIRLHARHN +D+ARGLFFEMQKW CKPDAETY+ALI+AHGRAGQWRWAMN+ DDMLRAA+  S ST N +      N CG
Sbjct:   16 SRADKPGATKASDAFQEKKSVSVNYDRGEHEVSVNIGGLRKADIPRRYRIRVENDRFQKDWSVSEVVDRLMALNRWEEVDGVLNSWVGRFARKNFPVLIRELSRRGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLI-----NACG 224

HSP 2 Score: 73.9442 bits (180), Expect = 1.186e-12
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 3 
Query:  702 ESMWMTAVAPSRSTYNNLINACGSTGNWREALKVCKKMTEN 824
            + M   A+APSRSTYNNLINACGS+GNWREAL+VCKKMT+N
Sbjct:  202 DDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDN 242
The following BLAST results are available for this feature:
BLAST of CX672093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP199_ARATH9.581e-7965.42Pentatricopeptide repeat-containing protein At2g41... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14H08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14H08-O16-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672093 ID=CX672093; Name=CX672093; organism=Citrus sinensis; type=EST; length=825bp
CCCCTTATCAAACTCACCCACTCGCCCGATTCAACTCACTCCAACTCACT
CAAACCGCCCCTGAAAATCCACTCCAACGCCAAACGCAAGCCCAAGCCCG
ACCCCAGCTCACCCTTCAAGGGCAGAAGATCGGGGTTCGTTGACTACGAC
AAAGGCCAACACGAGGTCTCCACCCAAGTCAGCGGACTCAGAAAATCCGA
CATACCAAGACGGCACCGTTTAGCGGTGGAGGGCAACAGGTTCCAAAAGG
ACTGGTCCGTTTCTGAGGTTGTTGAAAGAGTTTTGGCGCTCAAATACTAT
GAAGATGTTGAGGGTGTCTTGAACAGGTGGGTGGGCCGGTTCGCTAGAAA
AAACTTCCCTTTCTTAATAAAGGAAATAACACAAAGAGGTGCCATTAATC
ATAGCAATCAAGTTTTCAATTGGATGAAAAATCAGAAGAATTATTGTGCG
CGGAATGATATCTACAATATGATGATCAGGTTGCATGCTAGACATAATCA
AATAGACAAGGCCCGTGGACTTTTTTTCGAGATGCAAAAGTGGAGGTGCA
AGCCGGATGCTGAAACTTACAATGCTCTTATCAGTGCACATGGTAGAGCT
GGTCAGTGGCGTTGGGCTATGAATATCTTTGATGATATGCTGCGTGCAGC
TGTTACTTGGTCCTGGAGCACATTGAACTTCATATACCTTACAAGCAATC
AGAATCTATGTGGATGACTGCTGTTGCTCCTAGTCGATCAACCTATAATA
ACTTGATTAATGCTTGTGGATCTACTGGAAATTGGAGAGAAGCTCTGAAA
GTTTGCAAGAAAATGACAGAAAATG
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