CX672090

Overview
NameCX672090
Unique NameCX672090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5136 contig Csv1_Contig5136:1..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PPR39_ARATH (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.911e-14
Identity = 39/98 (39.80%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  471 ITPNEALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764
            I  ++A+ +F  M+  RP P  V  FN LF  +AKTK YE VL+L K++ S G+    YT +I+INCFC+  ++S+ F  +G+I++  + P+ V F +
Sbjct:   67 IKADDAVDLFRDMIQSRPLPT-VIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNT 163          
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PPR92_ARATH (Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.238e-13
Identity = 43/113 (38.05%), Postives = 65/113 (57.52%), Query Frame = 3
Query:  426 LKERCKSSGQGDINLITPNEALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764
            L+ER   +   DI L   N+A+ +F  M+  RP P  +  FN L   + K K Y+ V+SL K++   G+  D YT+NI+INCFC   +VS    +LG++L+  + P+ VT  S
Sbjct:   52 LRERLSKTRLRDIKL---NDAIDLFSDMVKSRPFPS-IVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGS 160          
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PP102_ARATH (Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.238e-13
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 3
Query:  435 RCKSSGQGDINLITPN--------EALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764
            R  SSG GD   I  N        +A+ +F  M+  RP P  +  FN L   +AK K ++ V+SL +++   G+  + YTYNILINCFC+  ++S    +LG++++  + P+ VT +S
Sbjct:   44 RAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLPS-IFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSS 160          
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PPR36_ARATH (Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.759e-13
Identity = 36/98 (36.73%), Postives = 63/98 (64.29%), Query Frame = 3
Query:  471 ITPNEALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764
            I  ++A+ +F  M++ RP P  V  F+ LF  +AKTK Y+ VL+L K++   G+  + YT +I+INCFC+  ++   F  +G+I++  + PN +TF++
Sbjct:   67 IKADDAIDLFRDMIHSRPLPT-VIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFST 163          
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PPR91_ARATH (Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.603e-13
Identity = 36/112 (32.14%), Postives = 68/112 (60.71%), Query Frame = 3
Query:  429 KERCKSSGQGDINLITPNEALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764
            +E+   +G  ++ L   ++A+ +F  M+  RP P  +  F+ L   +AK   ++ V+SL +++ + G+  +HYTY+ILINCFC+  ++     VLG++++  + PN VT +S
Sbjct:   49 REKLSRNGLSELKL---DDAVALFGEMVKSRPFPS-IIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSS 156          
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PP247_ARATH (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.603e-13
Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 3
Query:  429 KERCKSSGQGDINLITPNEALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764
            KER ++ G  DI +   N+A+ +F+ M+  RP P P+  FN L   +A+TK Y+ VL   K +   G+  D YT  I+INC+C+  ++   F VLGR  +  + P+ +TF++
Sbjct:   39 KERLRN-GIVDIKV---NDAIDLFESMIQSRPLPTPI-DFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFST 145          
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PPR90_ARATH (Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.146e-13
Identity = 41/118 (34.75%), Postives = 65/118 (55.08%), Query Frame = 3
Query:  435 RCKSSGQGDINLITPN--------EALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764
            R  SSG GD   I  N        +A+ +F  M+  RP P  +  FN L   +AK K ++ V+SL +++    +    YTYNILINCFC+  ++S    +LG++++  + P+ VT +S
Sbjct:   44 RAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPS-IVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSS 160          
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PPR94_ARATH (Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.796e-12
Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 3
Query:  432 ERCKSSGQGDI---------NLITPNEALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764
            ER  +S  GD          ++I  ++A+ +F  M+  RP P  +  FN L   +AK   +E V+SL +++ + G+  D YTY+I INCFC+  ++S    VL ++++  + P+ VT +S
Sbjct:   40 ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPS-IVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158          
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PP100_ARATH (Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.796e-12
Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 3
Query:  432 ERCKSSGQGDI---------NLITPNEALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764
            ER  +S  GD          ++I  ++A+ +F  M+  RP P  +  FN L   +AK   +E V+SL +++ + G+  D YTY+I INCFC+  ++S    VL ++++  + P+ VT +S
Sbjct:   40 ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPS-IVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158          
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PPR17_ARATH (Pentatricopeptide repeat-containing protein At1g06580 OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.875e-12
Identity = 44/128 (34.38%), Postives = 67/128 (52.34%), Query Frame = 3
Query:  381 SLRLTVKDRASLEKFLKERCKSSGQGDINLITPNEALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764
            SLR+      S     +ER +S     ++ I  N+AL +F  M    P P  +  F+ L   +AK   YE V+SLF+ L   G+  D Y++  LI+CFC+  R+S     LG++++  F P+ VTF S
Sbjct:   32 SLRICNSRAFSGRSDYRERLRSG----LHSIKFNDALTLFCDMAESHPLPS-IVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGS 154          
The following BLAST results are available for this feature:
BLAST of CX672090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PPR39_ARATH1.911e-1439.80Pentatricopeptide repeat-containing protein At1g12... [more]
PPR92_ARATH1.238e-1338.05Pentatricopeptide repeat-containing protein At1g62... [more]
PP102_ARATH1.238e-1335.59Pentatricopeptide repeat-containing protein At1g63... [more]
PPR36_ARATH2.759e-1336.73Pentatricopeptide repeat-containing protein At1g12... [more]
PPR91_ARATH3.603e-1332.14Pentatricopeptide repeat-containing protein At1g62... [more]
PP247_ARATH3.603e-1336.61Pentatricopeptide repeat-containing protein At3g22... [more]
PPR90_ARATH6.146e-1334.75Pentatricopeptide repeat-containing protein At1g62... [more]
PPR94_ARATH6.796e-1232.50Pentatricopeptide repeat-containing protein At1g62... [more]
PP100_ARATH6.796e-1232.50Pentatricopeptide repeat-containing protein At1g63... [more]
PPR17_ARATH8.875e-1234.38Pentatricopeptide repeat-containing protein At1g06... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14H05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14H05-O10-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672090 ID=CX672090; Name=CX672090; organism=Citrus sinensis; type=EST; length=765bp
ATAAAGTTCGCTATTTAAATTAAATTAGAAACGGTGAAATTCAAAAATTA
ACTATTATTTATCCATTCAAACGCAGAGACACAATTTGTCACGGTTCCAA
AAGCATAGCATCATTGAAAGTACCATATCCCACTTGTATTAATATTCGGA
AGAATGGAAGGTTCGATTTTGGTAATTCTTTTCTTCTTCCTCAACCCCAA
ATAATCAAAAGCTCTCCAATGGCTTTCGTATCCTCAACTCGTTCATTTCA
TTTTACTTCAATTTCAATATCGGCTCTTAGATGTAATTTCTCCTCTTCGT
TCCCTCATACCAGAAAACCTAAATCTTCAATTTCGAAAAATGAGCCCTCA
GATCCGACTGCAACAGCTAAACTTAAGGAGTCGCTACGACTGACAGTCAA
AGACAGAGCCTCACTCGAAAAATTTCTCAAAGAAAGGTGCAAATCATCAG
GTCAAGGTGATATTAATCTTATTACTCCTAATGAAGCCTTGTGTATCTTT
GATTACATGCTCAATATGCGCCCTTCTCCGCCTCCTGTCACTTCCTTCAA
TCTTTTGTTTGGTTGTCTTGCTAAGACTAAACATTATGAAACTGTCCTTT
CACTCTTCAAGAGACTCAATTCCACTGGGTTGTTTCCGGATCATTATACT
TACAACATATTGATTAATTGCTTTTGCAAAATGGGTCGAGTTTCTCATGG
TTTTGTTGTTCTTGGGAGAATCCTCAGGTCTTGTTTTACTCCAAATGCTG
TGACCTTTACTTCTT
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