CX672090
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PPR39_ARATH (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.911e-14 Identity = 39/98 (39.80%), Postives = 62/98 (63.27%), Query Frame = 3 Query: 471 ITPNEALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764 I ++A+ +F M+ RP P V FN LF +AKTK YE VL+L K++ S G+ YT +I+INCFC+ ++S+ F +G+I++ + P+ V F + Sbjct: 67 IKADDAVDLFRDMIQSRPLPT-VIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNT 163
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PPR92_ARATH (Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.238e-13 Identity = 43/113 (38.05%), Postives = 65/113 (57.52%), Query Frame = 3 Query: 426 LKERCKSSGQGDINLITPNEALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764 L+ER + DI L N+A+ +F M+ RP P + FN L + K K Y+ V+SL K++ G+ D YT+NI+INCFC +VS +LG++L+ + P+ VT S Sbjct: 52 LRERLSKTRLRDIKL---NDAIDLFSDMVKSRPFPS-IVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGS 160
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PP102_ARATH (Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.238e-13 Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 3 Query: 435 RCKSSGQGDINLITPN--------EALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764 R SSG GD I N +A+ +F M+ RP P + FN L +AK K ++ V+SL +++ G+ + YTYNILINCFC+ ++S +LG++++ + P+ VT +S Sbjct: 44 RAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLPS-IFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSS 160
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PPR36_ARATH (Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.759e-13 Identity = 36/98 (36.73%), Postives = 63/98 (64.29%), Query Frame = 3 Query: 471 ITPNEALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764 I ++A+ +F M++ RP P V F+ LF +AKTK Y+ VL+L K++ G+ + YT +I+INCFC+ ++ F +G+I++ + PN +TF++ Sbjct: 67 IKADDAIDLFRDMIHSRPLPT-VIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFST 163
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PPR91_ARATH (Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 3.603e-13 Identity = 36/112 (32.14%), Postives = 68/112 (60.71%), Query Frame = 3 Query: 429 KERCKSSGQGDINLITPNEALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764 +E+ +G ++ L ++A+ +F M+ RP P + F+ L +AK ++ V+SL +++ + G+ +HYTY+ILINCFC+ ++ VLG++++ + PN VT +S Sbjct: 49 REKLSRNGLSELKL---DDAVALFGEMVKSRPFPS-IIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSS 156
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PP247_ARATH (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.603e-13 Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 3 Query: 429 KERCKSSGQGDINLITPNEALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764 KER ++ G DI + N+A+ +F+ M+ RP P P+ FN L +A+TK Y+ VL K + G+ D YT I+INC+C+ ++ F VLGR + + P+ +TF++ Sbjct: 39 KERLRN-GIVDIKV---NDAIDLFESMIQSRPLPTPI-DFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFST 145
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PPR90_ARATH (Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.146e-13 Identity = 41/118 (34.75%), Postives = 65/118 (55.08%), Query Frame = 3 Query: 435 RCKSSGQGDINLITPN--------EALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764 R SSG GD I N +A+ +F M+ RP P + FN L +AK K ++ V+SL +++ + YTYNILINCFC+ ++S +LG++++ + P+ VT +S Sbjct: 44 RAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPS-IVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSS 160
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PPR94_ARATH (Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.796e-12 Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 3 Query: 432 ERCKSSGQGDI---------NLITPNEALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764 ER +S GD ++I ++A+ +F M+ RP P + FN L +AK +E V+SL +++ + G+ D YTY+I INCFC+ ++S VL ++++ + P+ VT +S Sbjct: 40 ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPS-IVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PP100_ARATH (Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.796e-12 Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 3 Query: 432 ERCKSSGQGDI---------NLITPNEALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764 ER +S GD ++I ++A+ +F M+ RP P + FN L +AK +E V+SL +++ + G+ D YTY+I INCFC+ ++S VL ++++ + P+ VT +S Sbjct: 40 ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPS-IVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158
BLAST of CX672090 vs. ExPASy Swiss-Prot
Match: PPR17_ARATH (Pentatricopeptide repeat-containing protein At1g06580 OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.875e-12 Identity = 44/128 (34.38%), Postives = 67/128 (52.34%), Query Frame = 3 Query: 381 SLRLTVKDRASLEKFLKERCKSSGQGDINLITPNEALCIFDYMLNMRPSPPPVTSFNLLFGCLAKTKHYETVLSLFKRLNSTGLFPDHYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 764 SLR+ S +ER +S ++ I N+AL +F M P P + F+ L +AK YE V+SLF+ L G+ D Y++ LI+CFC+ R+S LG++++ F P+ VTF S Sbjct: 32 SLRICNSRAFSGRSDYRERLRSG----LHSIKFNDALTLFCDMAESHPLPS-IVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGS 154 The following BLAST results are available for this feature:
BLAST of CX672090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CX672090 ID=CX672090; Name=CX672090; organism=Citrus sinensis; type=EST; length=765bpback to top |