CX672085

Overview
NameCX672085
Unique NameCX672085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672085_ssr46 microsatellite CX672085_ssr46:46..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5132 contig Csv1_Contig5132:1..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672085 vs. ExPASy Swiss-Prot
Match: ARR9_ARATH (Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.136e-59
Identity = 116/149 (77.85%), Postives = 130/149 (87.25%), Query Frame = 1
Query:  286 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVY---PNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTKIKDQ 723
            ESQFHVLAVDDS+ DRKLIERLL+ SS QVTTVDSGSKALEFLGL +    +  + +   P  HQ V VNL+ITDYCMPGMTGYDLLKK+KESS+ RDIPVVIMSSENVP+RISRCLEEGAEEFFLKPVRL+DLNKLKPH+MKTK+K+Q
Sbjct:    6 ESQFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDPNAFSKAPVNHQVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEGAEEFFLKPVRLADLNKLKPHMMKTKLKNQ 154          
BLAST of CX672085 vs. ExPASy Swiss-Prot
Match: ARR8_ARATH (Two-component response regulator ARR8 OS=Arabidopsis thaliana GN=ARR8 PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.384e-58
Identity = 112/147 (76.19%), Postives = 130/147 (88.44%), Query Frame = 1
Query:  286 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQ-SSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTKIKDQ 723
            ES+FHVLAVDDS+ DRK+IERLL+ SS QVTTVDSGSKALEFLGL  DD   ++ S  P +HQEV +NL+ITDYCMPGMTGYDLLKK+KES++ R IPVVIMSSENVP+RISRCLEEGAEEFFLKPV+L+DL KLKPH+MKTK+K +
Sbjct:    6 ESKFHVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNALSTSPQIHQEVEINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEEFFLKPVKLADLTKLKPHMMKTKLKKE 152          
BLAST of CX672085 vs. ExPASy Swiss-Prot
Match: ARR5_ARATH (Two-component response regulator ARR5 OS=Arabidopsis thaliana GN=ARR5 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.844e-41
Identity = 85/138 (61.59%), Postives = 113/138 (81.88%), Query Frame = 1
Query:  298 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTK 711
            HVLAVDDS++DRK IERLL+ SS +VT VDS ++AL++LGL   DG+++ SV     +++ +NL++TDY MPGMTGY+LLKKIKESS+ R+IPVVIMSSEN+  RI RCLEEGAE+F LKPV+L+D+ +L+  LMK +
Sbjct:   26 HVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGL---DGENNSSVG---FEDLKINLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLADVKRLRDSLMKAE 157          
BLAST of CX672085 vs. ExPASy Swiss-Prot
Match: ARR15_ARATH (Two-component response regulator ARR15 OS=Arabidopsis thaliana GN=ARR15 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.632e-41
Identity = 83/138 (60.14%), Postives = 112/138 (81.16%), Query Frame = 1
Query:  292 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 705
            + HVLAVDDS +DRK+IERLLK S+ +VTTV+SG++AL++LGL  D+G S         +++ VNL++TDY MPG+TGY+LLKKIKESS+LR+IPVVIMSSEN+  RI +C+ EGAEEF LKPV+L+D+ +LK  +M+
Sbjct:   17 ELHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNGSSGL-------KDLKVNLIVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEEFLLKPVKLADVKRLKELIMR 147          
BLAST of CX672085 vs. ExPASy Swiss-Prot
Match: ARR4_ARATH (Two-component response regulator ARR4 OS=Arabidopsis thaliana GN=ARR4 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.700e-40
Identity = 83/138 (60.14%), Postives = 108/138 (78.26%), Query Frame = 1
Query:  292 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 705
            + HVLAVDDS++DR +IERLL+ +S +VT VDSG +ALEFLGL  +   +           + V+L+ITDYCMPGMTGY+LLKKIKESS+ R++PVVIMSSENV +RI RCLEEGA++F LKPV+L+D+ +L+ HL K
Sbjct:   33 EVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDNEKASAEFD-------RLKVDLIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDFLLKPVKLADVKRLRSHLTK 163          
BLAST of CX672085 vs. ExPASy Swiss-Prot
Match: ARR7_ARATH (Two-component response regulator ARR7 OS=Arabidopsis thaliana GN=ARR7 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.900e-40
Identity = 81/143 (56.64%), Postives = 117/143 (81.82%), Query Frame = 1
Query:  292 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTKIKD 720
            + HVLAVDDSI+DRK+IERLL+ SS +VTTV+SG++AL++LGL  D G+ + ++     +++ VNL++TDY MPG++GYDLLKKIKESS+ R++PVVIMSSEN+  RI  CL+EGAEEF LKPV+L+D+ ++K  +M+ + ++
Sbjct:   23 ELHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGL--DGGKGASNL-----KDLKVNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFLLKPVKLADVKRIKQLIMRNEAEE 158          
BLAST of CX672085 vs. ExPASy Swiss-Prot
Match: ARR17_ARATH (Two-component response regulator ARR17 OS=Arabidopsis thaliana GN=ARR17 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.900e-40
Identity = 82/142 (57.75%), Postives = 113/142 (79.58%), Query Frame = 1
Query:  286 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTK 711
            E + HVLAVDD++IDRKL+ER+LK SS +VTT ++G +ALE+LGL   D Q + S+   M     VNL+ITDYCMPGMTG++LLKK+KESS+L+++PVVI+SSEN+P+RI++CL  GA+ F  KP++LSD+ KLK HL+  +
Sbjct:   17 EEELHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGL--GDPQQTDSLTNVMK----VNLIITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQMFMQKPLKLSDVEKLKCHLLNCR 152          
BLAST of CX672085 vs. ExPASy Swiss-Prot
Match: ARR3_ARATH (Two-component response regulator ARR3 OS=Arabidopsis thaliana GN=ARR3 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.788e-40
Identity = 83/138 (60.14%), Postives = 108/138 (78.26%), Query Frame = 1
Query:  292 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 705
            Q HVLAVDDS++DR +IERLL+ +S +VT VDSG +ALEFLGL +D               + V+L+ITDYCMPGMTGY+LLKKIKES+S +++PVVIMSSENV +RI RCLEEGAE+F LKPV+L+D+ +L+ +L +
Sbjct:   32 QVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAAVEFD-------RLKVDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLKPVKLADVKRLRSYLTR 162          
BLAST of CX672085 vs. ExPASy Swiss-Prot
Match: ARR6_ARATH (Two-component response regulator ARR6 OS=Arabidopsis thaliana GN=ARR6 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.455e-39
Identity = 82/138 (59.42%), Postives = 107/138 (77.54%), Query Frame = 1
Query:  298 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTK 711
            HVLAVDDS +DRK IERLL+ SS +VT VDS ++AL++LGL  ++            +++ VNL++TDY MPGMTGY+LLKKIKESS+ R++PVVIMSSEN+  RI RCLEEGAE+F LKPV+LSD+ +L+  LMK +
Sbjct:   26 HVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDVEEKSVGF-------EDLKVNLIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLSDVKRLRDSLMKVE 156          
BLAST of CX672085 vs. ExPASy Swiss-Prot
Match: ARR16_ARATH (Two-component response regulator ARR16 OS=Arabidopsis thaliana GN=ARR16 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.469e-39
Identity = 80/142 (56.34%), Postives = 112/142 (78.87%), Query Frame = 1
Query:  286 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTK 711
            + + HVLAVDD++IDRKL+ERLLK S  +VTT ++  +ALE+LGL  D  Q   ++  N+ +   V+L+ITDYCMPGMTG++LLKK+KESS+LR++PVVIMSSEN+P+RI++CL  GA+ F  KP++L+D+ KLK HLM  +
Sbjct:   26 DEELHVLAVDDNLIDRKLVERLLKISCCKVTTAENALRALEYLGLG-DQNQHIDALTCNVMK---VSLIITDYCMPGMTGFELLKKVKESSNLREVPVVIMSSENIPTRINKCLASGAQMFMQKPLKLADVEKLKCHLMNCR 163          
The following BLAST results are available for this feature:
BLAST of CX672085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ARR9_ARATH2.136e-5977.85Two-component response regulator ARR9 OS=Arabidops... [more]
ARR8_ARATH1.384e-5876.19Two-component response regulator ARR8 OS=Arabidops... [more]
ARR5_ARATH5.844e-4161.59Two-component response regulator ARR5 OS=Arabidops... [more]
ARR15_ARATH7.632e-4160.14Two-component response regulator ARR15 OS=Arabidop... [more]
ARR4_ARATH1.700e-4060.14Two-component response regulator ARR4 OS=Arabidops... [more]
ARR7_ARATH2.900e-4056.64Two-component response regulator ARR7 OS=Arabidops... [more]
ARR17_ARATH2.900e-4057.75Two-component response regulator ARR17 OS=Arabidop... [more]
ARR3_ARATH3.788e-4060.14Two-component response regulator ARR3 OS=Arabidops... [more]
ARR6_ARATH2.455e-3959.42Two-component response regulator ARR6 OS=Arabidops... [more]
ARR16_ARATH5.469e-3956.34Two-component response regulator ARR16 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14H02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14H02-O4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672085 ID=CX672085; Name=CX672085; organism=Citrus sinensis; type=EST; length=807bp
ATTTTCTTATTTTATTCTTCTTCTTTCTATTTGTACTGTAATTAAATATA
TATATATATTATATTCAGCATTGCTTGCTCTGTAATTCAAAGCCCAATCA
ACTAAGAAAATTTGCAAGATTTGGGATCAAATCTGGTCGGATTTTTGCTC
TTCCTTCTTTTTTTTTTTCCATTACAAAACTAGCAACCACCTCTTCATTT
CTCAAACAAACACAAAACCCAAATACATTGATTAATTCTTATTCATCAAA
TGGGCATGGCGGCAGCAGCGGCAGCAGCTGTAGCAGAGTCGCAGTTTCAT
GTTTTAGCAGTTGATGATAGCATTATCGACAGGAAGCTTATTGAGAGACT
CCTCAAGACCTCTTCATATCAAGTTACTACAGTTGATTCTGGTAGTAAAG
CTCTAGAATTTCTGGGATTACATGAAGATGATGGCCAAAGCAGCCACTCT
GTTTATCCAAACATGCATCAGGAGGTGGGAGTAAATCTTGTGATCACAGA
CTACTGTATGCCGGGAATGACTGGCTATGATTTGCTCAAGAAAATCAAGG
AATCTTCATCTCTAAGGGACATACCAGTGGTGATAATGTCATCTGAGAAT
GTTCCTTCAAGAATCAGCAGATGTCTAGAAGAGGGTGCAGAAGAATTCTT
TTTGAAGCCAGTCCGATTGTCGGATTTGAATAAACTGAAACCTCATTTGA
TGAAAACCAAAATTAAAGATCAAATTAAACAACAATCGCAACAGCAACAA
GAAGAAGAATCAGATGAATCTGATTTCCAATCACCATCACCACCACAGCA
ACAACCA
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