CX672078

Overview
NameCX672078
Unique NameCX672078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672078_ssr334 microsatellite CX672078_ssr334:334..345. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11029 contig Csv1_Contig11029:236..1057. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672078 vs. ExPASy Swiss-Prot
Match: AFR_ARATH (F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 6.229e-46
Identity = 91/151 (60.26%), Postives = 112/151 (74.17%), Query Frame = 1
Query:  376 TQPLIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMP--CPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWRLASPMLTPRSF 822
            +QPLI GLP++I ELCLL +PYPY AL RSVS SWNK IT+P F   K+SLS+S PYLF+F+F+K TARIQWQ+LD  SGRWFVLPPMP    K   P A +C S+PRQGKLFVLGG   D     +S ++Y A TN+W   SPM++PR++
Sbjct:   25 SQPLISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRFLFSKQSLSISSPYLFVFAFNKSTARIQWQSLDLASGRWFVLPPMPNSFTKISSPHALSCASMPRQGKLFVLGG--GDVN---RSAVVYTALTNRWSCISPMMSPRTY 170          
BLAST of CX672078 vs. ExPASy Swiss-Prot
Match: FBK17_ARATH (F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.226e-27
Identity = 59/149 (39.60%), Postives = 82/149 (55.03%), Query Frame = 1
Query:  379 QPLIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAI-TDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWRLASPMLTPRSF 822
            +PLIPGLPD++   CLL VP       +SV   W+    T   F   +K      P+LF+  F + T +IQW+ LD R+  W  +P MPC   VCP  F   S+PR+G +FV GGM SD++ P+   + Y    N W + + M+T RSF
Sbjct:   51 EPLIPGLPDDVALNCLLRVPVQSHVSSKSVCKRWHLLFGTKETFFAKRKEFGFKDPWLFVVGFSRCTGKIQWKVLDLRNLTWHEIPAMPCRDKVCPHGFRSVSMPREGTMFVCGGMVSDSDCPLDLVLKYDMVKNHWTVTNKMITARSF 199          
BLAST of CX672078 vs. ExPASy Swiss-Prot
Match: FBK22_ARATH (F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.079e-13
Identity = 47/147 (31.97%), Postives = 67/147 (45.58%), Query Frame = 1
Query:  382 PLIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWRLASPMLTPRSF 822
            PL+PGLPD++   CL+ VP      +R V   W +  +   F   +K L +S  ++++F   +   +I W   DP S  W  LPP+P   +     F C  L   G    L G +      M+  I Y A TN+W  A  ML  R F
Sbjct:   77 PLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKRDR-DGKISWNTFDPISQLWQPLPPVPREYSEA-VGFGCAVL--SGCHLYLFGGKDPLRGSMRRVIFYNARTNKWHRAPDMLRKRHF 219          
The following BLAST results are available for this feature:
BLAST of CX672078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AFR_ARATH6.229e-4660.26F-box protein AFR OS=Arabidopsis thaliana GN=AFR P... [more]
FBK17_ARATH2.226e-2739.60F-box/kelch-repeat protein At1g30090 OS=Arabidopsi... [more]
FBK22_ARATH9.079e-1331.97F-box/kelch-repeat protein At1g55270 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14G09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14G09-M18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672078 ID=CX672078; Name=CX672078; organism=Citrus sinensis; type=EST; length=823bp
CACTTACCACTTTATGGTTCCTAACGCCCTTATATTCTGGCTTCTAGAAG
TGAAAAACAAAAAACGTACAATATTAAAGATAGAAACAATCCCAAATAAA
CATTAAAAAATTCGAAACGTTTTCAGACAACACAAACATTATTCGCTAGC
TTGCTCTGTAAAGTTAATTTACTTTCGTCATCACTCACCCTTGTTCTCTG
TTTTCCTTCACTATATAATTGAAATAGATCACAAGGTAGATCAGCTTATT
AATTCGTTAATTTACTAAGTACCCTTTTGTTATTAATTTCTAATTGTAGT
CTCTCAAGCATGGAGGTTTCTCAATCGTCTACTTCGTCGTCGTCGAGCCA
AGAAACTGAAATTTCTGGAAGGAATACTCAGCCACTGATTCCGGGATTAC
CCGACGAGATCGGGGAGCTATGTCTGCTTCATGTTCCGTATCCGTACCAA
GCTTTGGTACGTTCAGTTTCGTATTCATGGAACAAAGCAATTACAGACCC
TGGCTTCGCTCTCTGCAAGAAGAGCCTGTCACTTTCTTTGCCTTACCTTT
TCATTTTTTCTTTTCATAAACCTACGGCCAGGATCCAATGGCAAGCCTTG
GACCCACGATCTGGCCGTTGGTTTGTTTTGCCTCCTATGCCATGCCCTAA
GGCTGTGTGCCCGCAAGCCTTTGCATGTACATCACTTCCACGGCAAGGCA
AATTATTTGTTCTGGGCGGGATGCGGTCGGACACAGAGACTCCCATGCAG
TCTACGATCATGTACCGTGCAACAACCAATCAATGGCGGTTAGCATCACC
AATGTTAACACCGAGGTCGTTTT
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