CX672074

Overview
NameCX672074
Unique NameCX672074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672074 vs. ExPASy Swiss-Prot
Match: JMJD5_RAT (JmjC domain-containing protein 5 OS=Rattus norvegicus GN=Jmjd5 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.109e-25
Identity = 64/136 (47.06%), Postives = 79/136 (58.09%), Query Frame = -2
Query:  211 SIPEYACPVFLAYFINRHVWILVWFVYTITISTDSGFFWLKQSIPLPLHFQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWWS 618
            SIP+Y C   L       + I  WF    TIS       L Q        QV+G+KYIRLY    SE +YP+   +L N+SQVD++N D  KFPK  +  F  CIL  G+ L+IP K+WHYVRSL +SFSVSFWWS
Sbjct:  288 SIPDYCC---LGNGEEEEITINAWFGPQGTISP------LHQDPQQNFLVQVLGRKYIRLYSPQESEAVYPHETHILHNTSQVDVENPDLEKFPKFTEAPFLSCILSPGDTLFIPAKYWHYVRSLDLSFSVSFWWS 414          
BLAST of CX672074 vs. ExPASy Swiss-Prot
Match: JMJD5_MOUSE (JmjC domain-containing protein 5 OS=Mus musculus GN=Jmjd5 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.109e-25
Identity = 64/136 (47.06%), Postives = 79/136 (58.09%), Query Frame = -2
Query:  211 SIPEYACPVFLAYFINRHVWILVWFVYTITISTDSGFFWLKQSIPLPLHFQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWWS 618
            SIP+Y C   L       + I  WF    TIS       L Q        QV+G+KYIRLY    SE +YP+   +L N+SQVD++N D  KFPK  +  F  CIL  G+ L+IP K+WHYVRSL +SFSVSFWWS
Sbjct:  288 SIPDYCC---LGNGEEEEITINAWFGPQGTISP------LHQDPQQNFLVQVLGRKYIRLYSPQESEAVYPHETHILHNTSQVDVENPDLEKFPKFTEAPFLSCILSPGDTLFIPAKYWHYVRSLDLSFSVSFWWS 414          
BLAST of CX672074 vs. ExPASy Swiss-Prot
Match: JMJD5_BOVIN (JmjC domain-containing protein 5 OS=Bos taurus GN=JMJD5 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.047e-24
Identity = 62/136 (45.59%), Postives = 79/136 (58.09%), Query Frame = -2
Query:  211 SIPEYACPVFLAYFINRHVWILVWFVYTITISTDSGFFWLKQSIPLPLHFQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWWS 618
            SIP+Y C   L       + I  WF    T+S       L Q        QV+G+KYIRLY    SE LYP+   +L N+SQVD++N D  KFP+  +  F  C+L  GE+L+IP K WHYVR+L +SFSVSFWWS
Sbjct:  280 SIPDYCC---LGDGEEEEITINAWFGPQGTVSP------LHQDPQQNFLAQVMGRKYIRLYSPQESEALYPHDTHLLHNTSQVDVENPDLEKFPRFAEAPFLSCVLSPGEVLFIPVKHWHYVRALDLSFSVSFWWS 406          
BLAST of CX672074 vs. ExPASy Swiss-Prot
Match: JMJD5_HUMAN (JmjC domain-containing protein 5 OS=Homo sapiens GN=JMJD5 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.512e-23
Identity = 63/136 (46.32%), Postives = 77/136 (56.62%), Query Frame = -2
Query:  211 SIPEYACPVFLAYFINRHVWILVWFVYTITISTDSGFFWLKQSIPLPLHFQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWWS 618
            SIP+Y     L       + I  WF    TIS       L Q        QV+G+KYIRLY    S  LYP+   +L N+SQVD++N D  KFPK     F  CIL  GE+L+IP K+WHYVR+L +SFSVSFWWS
Sbjct:  290 SIPDYCS---LGDGEEEEITINAWFGPQGTISP------LHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSFWWS 416          
BLAST of CX672074 vs. ExPASy Swiss-Prot
Match: JMJCD_DICDI (JmjC domain-containing protein D OS=Dictyostelium discoideum GN=jcdD PE=4 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.035e-17
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = -2
Query:  226 PLHF--------QVVGKKYIRLYPASLSEELYPYSETMLC-NSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSV 480
            PLH+        Q+VG+KYI+L+    S  LYP+  + L  N+S VD++N D +KFP  ++ ++ + IL+ GE+LYIPP +WH+V+SLS SFS+
Sbjct:  353 PLHYDPKHNFLCQIVGRKYIKLFSPKESNNLYPHLNSKLFFNTSMVDVENPDHSKFPLFKNCDYIELILNAGEILYIPPTYWHFVKSLSQSFSI 446          
BLAST of CX672074 vs. ExPASy Swiss-Prot
Match: JMJCF_DICDI (JmjC domain-containing protein F OS=Dictyostelium discoideum GN=jcdF PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.048e-12
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = -2
Query:  214 PLHF--------QVVGKKYIRLYPASLSEELY--------------PYSETMLCNSSQVDLDNIDETKFP--KVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWW 480
            PLHF        Q+VG KY+RLYP +    LY                S+T   N S VD ++ D  K+P  K+ +  + +CIL  G++L++P  ++HYVRSLS S S+SFW+
Sbjct:  359 PLHFDSYDNFLTQIVGYKYVRLYPQNQISNLYLKKDQGDSDDNNLVKNSKTAQNNISFVDFEDTDFEKYPLLKIANQHYTECILGPGDILFMPSGYFHYVRSLSTSLSLSFWF 471          
BLAST of CX672074 vs. ExPASy Swiss-Prot
Match: JMJCC_DICDI (JmjC domain-containing protein C OS=Dictyostelium discoideum GN=jcdC PE=4 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.562e-12
Identity = 33/94 (35.11%), Postives = 57/94 (60.64%), Query Frame = -2
Query:  199 LHFQVVGKKYIRLYPASLSEELYPYS-ETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWWSDGGS 477
            LH  ++G+K  +L+   ++   +    E    + S+ DLDN D  KFP+ ++ +  +  L++GEML+IP  WWH+V++L  S S++FW+   GS
Sbjct:  199 LHAIIIGRKQFKLFDPIVNVNCFKRKKEWGKFHQSEFDLDNPDFNKFPEAKNFKIIEIQLNQGEMLFIPKLWWHHVKTLEPSISINFWFQHIGS 292          
BLAST of CX672074 vs. ExPASy Swiss-Prot
Match: HIF1N_MOUSE (Hypoxia-inducible factor 1-alpha inhibitor OS=Mus musculus GN=Hif1an PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.016e-11
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = -2
Query:  214 QVVGKKYIRLYPASLSEELYPYSETMLCN-SSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSL---SISFSVSFWW 468
            Q+ G K   L+P    E LYPY     C+  SQVD DN D  +FP  R++  ++ ++  G++LYIP  WWH++ SL    I+ +V+FW+
Sbjct:  209 QIKGHKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFRNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 297          
BLAST of CX672074 vs. ExPASy Swiss-Prot
Match: HIF1N_HUMAN (Hypoxia-inducible factor 1-alpha inhibitor OS=Homo sapiens GN=HIF1AN PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.862e-11
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = -2
Query:  214 QVVGKKYIRLYPASLSEELYPYSETMLCN-SSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSL---SISFSVSFWW 468
            Q+ G K   L+P    E LYPY     C+  SQVD DN D  +FP  +++  ++ ++  G++LYIP  WWH++ SL    I+ +V+FW+
Sbjct:  209 QIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 297          
The following BLAST results are available for this feature:
BLAST of CX672074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
JMJD5_RAT2.109e-2547.06JmjC domain-containing protein 5 OS=Rattus norvegi... [more]
JMJD5_MOUSE2.109e-2547.06JmjC domain-containing protein 5 OS=Mus musculus G... [more]
JMJD5_BOVIN1.047e-2445.59JmjC domain-containing protein 5 OS=Bos taurus GN=... [more]
JMJD5_HUMAN1.512e-2346.32JmjC domain-containing protein 5 OS=Homo sapiens G... [more]
JMJCD_DICDI8.035e-1744.68JmjC domain-containing protein D OS=Dictyostelium ... [more]
JMJCF_DICDI2.048e-1238.05JmjC domain-containing protein F OS=Dictyostelium ... [more]
JMJCC_DICDI4.562e-1235.11JmjC domain-containing protein C OS=Dictyostelium ... [more]
HIF1N_MOUSE1.016e-1139.33Hypoxia-inducible factor 1-alpha inhibitor OS=Mus ... [more]
HIF1N_HUMAN3.862e-1138.20Hypoxia-inducible factor 1-alpha inhibitor OS=Homo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14G07_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14G07-M14-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672074 ID=CX672074; Name=CX672074; organism=Citrus sinensis; type=EST; length=829bp
TTTTTTTTTTTTTTTTTGATTACAATCAACTAACAATCAAAATGTTCCTA
TATAAGATGATGATAATACACTCTAAACCATCACTGAATTCTGCTCCTTT
TGTTTGTATAAAGATTATATCTAATATTGTTGTACCCAGATCTCTATCAG
AAACAACTTAGCACGCATATAAACGATTTGTTACGAGTATGCAGTTGAAC
TTCCACCATCACTCCACCAAAAGCTAACTGAAAAACTTATAGAAAGAGAG
CGTACGTAGTGCCACCATTTGGGTGGGATGTAAAGCATTTCACCTTCGTC
TAATATACAGTCAAAAAATTCTAGGTCACGCACCTTTGGAAACTTTGTCT
CATCTATGTTGTCTAGATCAACCTGGCTGGAATTGCAAAGCATGGTTTCG
GAGTATGGATAAAGTTCCTCTGACAATGAAGCTGGGTAAAGTCTAATATA
CTTTTTACCAACAACCTGAAAATGAAGAGGCAAAGGAATGGATTGTTTCA
GCCAAAAAAAGCCTGAATCAGTAGATATGGTAATCGTATAAACAAACCAC
ACAAGTATCCACACATGTCTATTAATGAAGTATGCAAGAAACACCGGACA
GGCATATTCAGGAATGGAACTTATCCAGTAAATGATCTCCAATAAGAAAA
CTAATCATAGACCTAGCATATTGTTGGATTTATGAAGCACATAAAATTTG
AAAAAAATGAAGCTGTAGCACTTATCCAAGGATGCGAATAAACACAAATT
AGTACTAACAAGATAATTAAATAATTCGCTGCCCACAGCCGTCTGATCCA
GCAGCATTTAATCTATCCATATCTATGGG
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