CX672073

Overview
NameCX672073
Unique NameCX672073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10712 contig Csv1_Contig10712:172..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672073 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.699e-26
Identity = 83/224 (37.05%), Postives = 110/224 (49.11%), Query Frame = 1
Query:  187 EKRGPGNVNLLASPASMGSVCQKS-SVIKERNYMGLXXXXXXXXXXXXXXXXXXXXXXLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPS-QKNVVSGNKRGFSDAMDGFLEGK--YLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITXXXXXXXXXXXXXXXKAQVVGWPPIRSFRKKSLAT 846
            E+    NV++ +S  +   + + +   +KE NY+GL                      ++LKATEL LGLPGSQSP R +EL LL PA+LDEKP FPL P+ D    S QKN  SGNKRGFSD MD F E K    +    + P AA    +    + +N+     KG+              NN +                 KAQ+VGWPP+RS+RK +LAT
Sbjct:    4 EEELQSNVSVASSSPTSNCISRNTLGGLKEHNYLGLSDCSSVGSSTLSPLAEDDKAT-ISLKATELTLGLPGSQSPARDTELNLLSPAKLDEKPFFPLLPSKDEICSSSQKNNASGNKRGFSDTMDQFAEAKSSVYTEKNWMFPEAAATQSVTKKDVPQNI----PKGQSSTT----------NNSS------------SPPAAKAQIVGWPPVRSYRKNTLAT 200          
BLAST of CX672073 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21
Identity = 77/199 (38.69%), Postives = 93/199 (46.73%), Query Frame = 1
Query:  256 SSVIKERNYMGLXXXXXXXXXXXXXXXXXXXXXXLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSD--SHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITXXXXXXXXXXXXXXXKAQVVGWPPIRSFRKKSLAT 846
            S  +KERNY+GL                      LN KATELRLGLP SQSPER ++  LL P   DEK LFPL P+ D  S     KNVVSGNKRGF+D  D F       S    S R         G I   L P+     +   ++    +  +NN                   KAQVVGWPPIRS+RK ++A+
Sbjct:   16 SPCLKERNYLGLSDCSSVDSSTIPNVVGKSN---LNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSGNKRGFADTWDEF-------SGVKGSVRPG-------GGINMMLSPKVKDVSKSIQEERSHAKGGLNNAPAA---------------KAQVVGWPPIRSYRKNTMAS 182          
The following BLAST results are available for this feature:
BLAST of CX672073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
IAA9_ARATH5.699e-2637.05Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA8_ARATH1.897e-2138.69Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_14G06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14G06-M12-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672073 ID=CX672073; Name=CX672073; organism=Citrus sinensis; type=EST; length=848bp
GTCCTTAGCTCTTTCTCTCTCTTTCTCTTCTCTCTCAAGTCTGAAGTCTC
AGCTTTGCAAATCTTCTACTTCTTCTCCGGCAAGTGATCAACAAAACCAA
CCAGATCTTCTTATGTTAAACAGGTTGTACGGAATTAAAGTATCAGATTT
TAGATTTTGATGTCTCCACCACCTGGTGTTGGTGAGGAGAAGAGGGGTCC
TGGCAATGTCAATTTACTGGCTTCTCCAGCCTCCATGGGCAGCGTATGCC
AAAAAAGCTCGGTAATAAAAGAGCGTAACTACATGGGATTATCAGACTCT
TCTTCAATGGACAGCTCAGTGGTCTCCAGTGTCTCCGGTGAGAGTAGCAA
GAGCAGTCTGAATCTCAAGGCTACAGAGCTGAGGCTCGGACTTCCTGGGT
CCCAGTCTCCAGAGAGAGGTTCGGAACTCTGCCTCCTAGGTCCTGCGCAA
CTGGATGAGAAGCCATTGTTCCCTTTGCATCCAACAAGTGATAGCCACTA
CCCATCACAGAAGAATGTTGTTTCTGGAAATAAAAGGGGGTTCTCTGATG
CTATGGATGGGTTCTTAGAGGGGAAATATCTTTCTAGTTCTGAGCTATTG
TCACCCAGGGCTGCTCCAAACTTGGGGCTGAAGTCAGGTTCTATTCAAGA
GAACCTTGGGCCTCAAACCGCTAAAGGCAAAGAGATGGCCAACCAAAAAG
CAGTGCAGGAAAGGCCTCATGTTAACAATGAGACCATAACAAACCATAAT
GGTTCTGCAAATAACAGTAGCAGTGCACCTGCTGCCAAGGCACAGGTTGT
GGGTTGGCCACCAATTAGATCATTTAGGAAGAAATCATTGGCCACTTC
back to top