CX672072

Overview
NameCX672072
Unique NameCX672072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2216 contig Csv1_Contig2216:772..1677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672072 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.494e-67
Identity = 124/158 (78.48%), Postives = 141/158 (89.24%), Query Frame = -3
Query:  434 SSAPAAKAQVVGWPPIRSFRKNSLATS-SKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 904
            ++APAAKAQVVGWPPIRS+RKN++A+S SKN DEVDGK G   LFVKVSMDGAPYLRKVDL+ Y+ YQ+LSSALEKMFSCFT+GQ G HGA GRE +SE KLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE+F  TC++L+IMK +D+IGLAP AVEK
Sbjct:  157 NNAPAAKAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGLGVLFVKVSMDGAPYLRKVDLRTYTSYQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEIFTETCQKLKIMKGSDSIGLAPGAVEK 314          
BLAST of CX672072 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 2.158e-66
Identity = 121/159 (76.10%), Postives = 143/159 (89.94%), Query Frame = -3
Query:  434 SSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL--APRAVEK 904
            SS PAAKAQ+VGWPP+RS+RKN+LAT+ KN+DEVDG+ GS ALFVKVSMDGAPYLRKVDL++Y+ Y ELSSALEKMF+ FT+GQ GS+GA G++MLSE+KLKDLL+G ++VLTYEDKDGDWMLVGDVPWEMFI  CK+L+IMK  DAIGL  APRA+EK
Sbjct:  175 SSPPAAKAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEK 333          
BLAST of CX672072 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.225e-61
Identity = 117/167 (70.06%), Postives = 139/167 (83.23%), Query Frame = -3
Query:  431 SSAPAAKAQVVGWPPIRSFRKNSLATSSK----NN---DEVDGKAGSS--ALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKC 904
            ++APA+KAQVVGWPPIRSFRKNS+A+S      NN   +E + K+G     L+VKVSM+GAPYLRK+DLK Y  Y ELSSALEKMFSCFTIGQ+GSHG  GR+ L+ES+L DLL GSE+V+TYEDKD DWMLVGDVPWEMFI +CK+LRIMKS++AIGLAPR +EKC
Sbjct:  135 ATAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKC 301          
BLAST of CX672072 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.923e-55
Identity = 112/161 (69.57%), Postives = 128/161 (79.50%), Query Frame = -3
Query:  431 AAKAQVVGWPPIRSFRKNSLATSS-KNNDEVDG---KAGS---SALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKC 892
            A KAQVVGWPP+RS+RKN LA  + K  D  DG   K+G+   +A FVKVSMDGAPYLRKVDLK Y  Y ELS ALEKMFS FTIG  GSHG  G   ++ESK+ DLL+GSE+V TYEDKDGDWMLVGDVPWEMF+ +CKRLRIMK ++AIGLAPRA+EKC
Sbjct:  116 APKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNG---MNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKC 273          
BLAST of CX672072 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.232e-54
Identity = 105/162 (64.81%), Postives = 125/162 (77.16%), Query Frame = -3
Query:  434 SSAPAAKAQVVGWPPIRSFRKNSLATSS-----KNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 904
            + APAAKAQVVGWPPIRS+RKN++A S      K++ E      S  L+VKVSMDGAPYLRKVDLK Y  Y+ELS ALEKMFSCFT+G   S+G  GR+ LS+ +L DL +G+E VLTYEDKD DWMLVGDVPW MF  +C+RLRIMK +DA+GLAPRA +K
Sbjct:  100 AQAPAAKAQVVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDK 261          
BLAST of CX672072 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.604e-53
Identity = 103/170 (60.59%), Postives = 131/170 (77.06%), Query Frame = -3
Query:  431 PAAKAQVVGWPPIRSFRKNSLA-------TSSKNNDEVDGKAGSSA--------LFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKC 895
            P AKAQVVGWPP+RSFRKN ++        +++ ND+  G +G+++         +VKVSMDGAPYLRK+DLK Y  YQ+LS+AL KMFS FTIG YG  G   ++ ++ESKL DLL+GS++V TYEDKDGDWMLVGDVPWEMF+ +CKR+RIMK ++AIGLAPRA+EKC
Sbjct:   65 PPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKC 232          
BLAST of CX672072 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 1.501e-51
Identity = 98/157 (62.42%), Postives = 122/157 (77.71%), Query Frame = -3
Query:  434 SAPAAKAQVVGWPPIRSFRKNSLATSSKNN-DEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 901
            S P AKAQVVGWPP+R++RKN +A       +E     G +  FVKVSMDGAPYLRKVDLK Y+ Y++LS AL KMFS FT+G YG+ G +  + ++ESK+ DLL+ SE+V +YEDKDGDWMLVGDVPW MF+ +CKRLRIMK ++AIGLAPRA+EK
Sbjct:   69 SKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMI--DFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEK 223          
BLAST of CX672072 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.660e-50
Identity = 100/157 (63.69%), Postives = 118/157 (75.16%), Query Frame = -3
Query:  431 PAAKAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAI--GLAPRAVEKC 895
            P AK QVVGWPP+RSFRKN LA      +E +  +  +A FVKVSMDGAPYLRKVDLK Y  Y+ELS +L KMFS FT G   S G   ++ ++ESKL DLL+ S++V TYEDKDGDWMLVGDVPWEMF+ +CKRLRIMK  +AI  GLAPRA+ KC
Sbjct:   85 PPAKTQVVGWPPVRSFRKNMLAVQKSVGEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGM--KDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKC 239          
BLAST of CX672072 vs. ExPASy Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.168e-50
Identity = 102/165 (61.82%), Postives = 125/165 (75.76%), Query Frame = -3
Query:  434 SAPAAKAQVVGWPPIRSFRKNSLA---TSSKNNDEVDGKAGS------SALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 901
            S P AKAQVVGWPP+R++RKN +    TSS   +    KAG+       A  VKVSMDGAPYLRKVDLK Y  YQ+LS AL KMFS FT+G YG+ G +  + ++ESKL +LL+ SE+V +YEDKDGDWMLVGDVPWEMF+ +CKRLRIMK ++A+GLAPRA+EK
Sbjct:   75 SKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMI--DFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEK 237          
BLAST of CX672072 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSJ (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. japonica GN=IAA5 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.089e-49
Identity = 93/158 (58.86%), Postives = 118/158 (74.68%), Query Frame = -3
Query:  434 SSAPAAKAQVVGWPPIRSFRKNSLATS-SKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 904
            ++ PAAKAQVVGWPP+R++RKN+LA S SK   E  G A    L+VKVSMDGAPYLRKVDLK YS Y++LS ALEKMFSCF  GQ G   +  R+ L+     D L   E+VLTYEDKD DWMLVGD+PW++F   C++L+IM+ +DA G+APR++E+
Sbjct:  109 AAPPAAKAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGPLYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQ 266          
The following BLAST results are available for this feature:
BLAST of CX672072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA8_ARATH1.494e-6778.48Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
IAA9_ARATH2.158e-6676.10Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA27_ARATH1.225e-6170.06Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA30_ORYSJ2.923e-5569.57Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA21_ORYSJ3.232e-5464.81Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]
IAA16_ARATH1.604e-5360.59Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
IAA14_ARATH1.501e-5162.42Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]
AUX28_SOYBN1.660e-5063.69Auxin-induced protein AUX28 OS=Glycine max GN=AUX2... [more]
IAA7_ARATH2.168e-5061.82Auxin-responsive protein IAA7 OS=Arabidopsis thali... [more]
IAA5_ORYSJ4.089e-4958.86Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14G06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14G06-M12-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672072 ID=CX672072; Name=CX672072; organism=Citrus sinensis; type=EST; length=906bp
TTTTTTTTGACAGGTAATGGAGACAGGGTTACAAATTAATGACATGGATG
ATGTCTTTTTTTTTTCACCATACAAGCACGCATAACAAAGTAGTTCAACA
AACAACGCACTTTACAAACTAAGGCACCTGTTGGGAACAGGAACTTGTCA
GAACTCCTTGAGGAGATCCAATCTCAGAGGTTCACTCCAAAATACAAGGT
CTACGAGAGTTTTATAATTTTAATAACAGGACAACAATCACAGCTTACAG
AACATGAAAATCCATCACAGTAAACGTAGTAATGTGGTAACACAGAAAAG
CAGATGCCCTCCAACACCCCCAAGCATGAATTTGGATCATGTTATTTTCT
GTCATCTGCCAGAATTTTATCACCGAGAATTGCTGGATGAATACCAACAA
TATGTTGAACAGTAGCTAGTTTCTGTTCCTGCATTTCTCCACAGCCCTTG
GCGCTAGGCCAATGGCATCAGTGCTCTTCATAATCCTCAACCTCTTGCAT
GTACCAATAAACATCTCCCAGGGGACATCACCCACAAGCATCCAATCCCC
ATCTTTGTCTTCATAAGTGAGAACGAATTCTGAGCCATGTAGCAGATCCT
TCAACTTGCTTTCACTCAGCATCTCCCTGCCCAGAGCCCCATGAGATCCA
TATTGCCCAATTGTAAAACAGCTGAACATCTTCTCAAGGGCAGAAGATAG
TTCCTGATATTTAGAGTAATTTTTCAAGTCCACTTTTCTTAAATAAGGAG
CACCATCCATGCTGACCTTAACAAACAGAGCACTGGAACCTGCTTTTCCA
TCTACTTCATCATTATTCTTAGACGAAGTGGCCAATGAATTCTTCCTAAA
TGATCTAATTGGTGGCCAACCCACAACCTGTGCCTTGGCAGCAGGTGCAC
TGCTAC
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