CX672043

Overview
NameCX672043
Unique NameCX672043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX672043 vs. ExPASy Swiss-Prot
Match: Y3739_ARATH (Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.496e-38
Identity = 94/172 (54.65%), Postives = 115/172 (66.86%), Query Frame = -3 
Query:  269 DSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLN---VSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFGDLVKTLTEDLAKKNCGS---ESTNVPKTMQKSNSALARFQKSFKRLTSSNNGRYEESQSQSDALRDLEIL 766
            D VTEIT+ NRPKDVFFDWF NPFLI+KEQ+KA NL+E EE YL +LVL  G+  RLK  N    SPP +ERKRAEL A ARR+QG+TK+VSRYPTFRR F  LVK L+EDL  K+  S   ES   P    K  S +   Q+SF+R  S N     + +SQ    R+++I+
Sbjct:  421 DGVTEITTMNRPKDVFFDWFLNPFLILKEQMKATNLSEEEEKYLGRLVLLFGDPERLKSSNAISASPPLTERKRAELDAFARRMQGLTKTVSRYPTFRRHFVALVKKLSEDLDLKDNNSAKDESITEPPAPVKIISRIFS-QRSFRRKGSVNG---SDQESQKGVSRNVDIV 588
The following BLAST results are available for this feature:
BLAST of CX672043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3739_ARATH2.496e-3854.65Uncharacterized membrane protein At3g27390 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14F03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14F03-K6-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672043 ID=CX672043; Name=CX672043; organism=Citrus sinensis; type=EST; length=768bp
ATTCTTAGATGGTAAAATACAACAATTATGAAGAAAACAAATAGCAATAT
ACATTTCACTGTTAAATTTTCTGCACAGGGAAAAGCCTTATTCTCTGTTG
ACTTATTCTCTGTTGACTGCGTTTTATAAAAATGAATTACGTTCTCCTCC
CCAAAGGCCAGCTACAAGCAATTACTCCAGAAATACTTTCTTCTCCCTTG
TGCGAGCTTACGAGCAGTAAAATTCAGCATGTGATGAGCTTGCCTTAACT
GTTTGACATTCCAAATCACAAAATTTCTAAGTCCCTTAAAGCATCTGATT
GTGATTGCGACTCTTCATAACGTCCATTGTTACTGCTTGTTAATCTTTTA
AAGGATTTCTGAAACCGGGCCAATGCACTATTTGATTTTTGCATTGTCTT
AGGCACATTTGTTGATTCACTGCCACAGTTCTTCTTGGCAAGATCTTCTG
TGAGGGTCTTTACCAGATCACCAAACTGCCGCCTGAAAGTTGGATATCTT
GAGACAGATTTGGTGATCCCTTGAAGCCTTCGTGCTAATGCACCAAGTTC
CGCTCGTTTACGCTCAGATTCCGGCGGTGAGACATTTAAATCCTTTAACC
TCCCAATATTGCCACAAAATAGTACCAATTTGCTTAGGTAGTCCTCCTCT
GCCTCTGTTAAGTTTTCTGCTTTTATCTGCTCCTTGATTATCAAGAAGGG
GTTAAAAAACCAATCAAAGAACACGTCCTTTGGTCTGTTTGAGCTAGTTA
TCTCAGTAACGCTGTCAC
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