CX672042

Overview
NameCX672042
Unique NameCX672042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX672042 vs. ExPASy Swiss-Prot
Match: Y3739_ARATH (Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.511e-27
Identity = 50/94 (53.19%), Postives = 68/94 (72.34%), Query Frame = 2 
Query:  515 MEPPKGFLASLWSFICFLPYFXXXXXXXXXXXXXFCPVICLMMTIGNSAIILGLLPAHVLWTYYCILRAKQLGPVLKLLTCICIPVFLILWPVV 796
            MEPP GF ASL+ F+ FLPYF              CP++CL++TIGNSA+IL LLP H++WT+Y I+ AKQ+GP+LK+  C+C+P  +ILWP+V
Sbjct:    1 MEPPIGFRASLFQFLLFLPYFIGLLFLGFIKGIVLCPLVCLVVTIGNSAVILSLLPVHIVWTFYSIVSAKQVGPILKIFLCLCLPAAIILWPIV 94
The following BLAST results are available for this feature:
BLAST of CX672042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3739_ARATH8.511e-2753.19Uncharacterized membrane protein At3g27390 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14F03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14F03-K6-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672042 ID=CX672042; Name=CX672042; organism=Citrus sinensis; type=EST; length=827bp
GTCGCTTCTCGTTGCTGGTTGAAGCACCAAGAAAAAAAGAAAAAAAATCA
AAATCTCATTGAAAAGCAAAATTACTAAAACAGAGGAGAGAAGAGAACAA
TTTCTGTCTTTTTGATAGTATAGACGGGTATGGTAACTGCTCTACCAGAC
GATTGCTATCATGTTGATAACTGCTCTATCAGACGATTGCTATTATGTTG
AAGCTTTGAAATTCAAACTGTTCTTTCATATGTCTTTGGTCCATTCTCCC
TTACCCCGTTTGATACCTTTCGTATGTTCGAGGACTGTTTACTTGAACAA
AGGAAACTTCTCAAGAGACCAACCCATCTTTTGTTTTGATCATTTGGGGC
CAAAGAAGAGCAAATTGTGTATTTGTACTTTGTTTTTGTAATTTGAAGTG
TATAAGAAGTTGGTTATTTTTTTTTTTTTTTTTTTTTTTCTTTCATTTGC
AGGGTTGATTTTGAGATGGGTTTGCTGTGAAATTTACAGAGATCTAAGGA
GTTGAGAGAATAAAATGGAGCCACCCAAAGGGTTTTTGGCTTCGTTATGG
AGCTTTATTTGCTTTTTACCTTACTTCATTGGGCTTCTGCTTCTGGGCAT
CATTAAAGGAATCATTTTCTGCCCTGTGATATGCCTTATGATGACAATTG
GAAACTCGGCGATCATATTGGGGCTTTTGCCGGCTCATGTCTTATGGACT
TACTATTGCATTCTCAGAGCTAAACAATTAGGACCAGTTCTGAAGCTTCT
TACCTGCATATGCATACCAGTTTTCTTAATTTTGTGGCCAGTCGTTGGCA
TTGGTGCAAGCATCATAGGGGGAGCGC
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