CX672038

Overview
NameCX672038
Unique NameCX672038
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672038 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.892e-47
Identity = 103/226 (45.58%), Postives = 140/226 (61.95%), Query Frame = -1
Query:  183 RRSPFNSVSGTSMSCPHISGIASLLKILHPDWSPAAIQSAIMTTA-STHDNNKQQILNASFAEATPFSYGAGHVQPNLAMDPGLVYDLTANDYLNFLCTLGYNKKEIFWFSKNYTYTC-PNHTISLVDFNYPSISVPKLS-GSITVTRKVKNVGSPGTYQALLKS-PKGVSVTIAPKSLKFINFGEEKSFKVIIKAQNASVTKDYAFGELIWSDDKHHQVRSPIVV 848
            RR  FN +SGTSMSCPH+SG+A+LLK +HP+WSPAAI+SA+MTTA  T+ + K  +  A+   +TPF +GAGHV P  A +PGL+YDLT  DYL FLC L Y   +I   S+   YTC P+ + S+ D NYPS +V     G+   TR V +VG  GTY   + S   GV +++ P  L F    E+KS+ V     ++  +   +FG + WSD K H V SP+ +
Sbjct:  531 RRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRR-NYTCDPSKSYSVADLNYPSFAVNVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGK-HVVGSPVAI 754          
BLAST of CX672038 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.030e-39
Identity = 89/230 (38.70%), Postives = 136/230 (59.13%), Query Frame = -1
Query:  174 KRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSPAAIQSAIMTTASTHDNNKQQILNASFAEATPFSYGAGHVQPNLAMDPGLVYDLTANDYLNFLCTLGYNKKEIFWFSKNYTYTCPNHTISLVDFNYPSISV---PKLSGSITVTRKVKNVG-SPGTYQALLKSPKGVSVTIAPKSLKFINFGEEKSFKVIIKAQNASVTKDYAFGELIWSDDKHHQVRSPIVVKAV 851
            +R + FN +SGTSMSCPHI+GIA+ +K  +P WSPAAI+SA+MTTAS         +NA F     F+YG+GHV P  A+ PGLVYD   +DY+ FLC  GYN + +   + +Y+     +T  + D NYPS  +   P  + +    R + +V     TY+A++ +P+G+++++ P  L F   G+ KSF + ++    S+        L+WSD  H+ VRSPI + ++
Sbjct:  513 RRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASP--------MNARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVR---GSIKGFVVSASLVWSDGVHY-VRSPITITSL 730          
BLAST of CX672038 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.231e-36
Identity = 87/227 (38.33%), Postives = 129/227 (56.83%), Query Frame = -1
Query:  183 SPFNSVSGTSMSCPHISGIASLLKILHPDWSPAAIQSAIMTTASTHDNNKQQILNASFAEATPFSYGAGHVQPNLAMDPGLVYDLTANDYLNFLCTLGYNKKEIFWFSKNYTYTCPNHTISL--VDFNYPSISV----PKLSGSITVTRKVKNVGSPGT-YQALLKSPKGVSVTIAPKSLKFINFGEEKSFKVIIKAQNASVTKDYAFGELIWSDDKHHQVRSPIVV 842
            S F  +SGTSM+CPH++G+A+ +K  HPDW+PAAI+SAI+T+A          ++    +   F+YG G + P  A  PGLVYD+    Y+ FLC  GYN   +       + +C +    L     NYP+I +     K S      R+V NVG P + Y A +++PKGV +T+ P+SL F    +++SFKV++KA+  +  K    G L+W   + H VRSPIV+
Sbjct:  527 SKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSAKP--------ISRRVNKDAEFAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPGK-IVSGLLVWKSPR-HSVRSPIVI 743          
The following BLAST results are available for this feature:
BLAST of CX672038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SUBL_ARATH5.892e-4745.58Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
CUCM1_CUCME2.030e-3938.70Cucumisin OS=Cucumis melo PE=1 SV=1[more]
XSP1_ARATH1.231e-3638.33Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_14F01_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14F01-K2-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672038 ID=CX672038; Name=CX672038; organism=Citrus sinensis; type=EST; length=851bp
TTTTTTTTTTTTTTTTTAAATTTAATAGTAATTATACCAGCATCATTGGC
TGAATTATGAAAATAAAACATATATAGTCAATCTTGTTTATGGGCCATCA
TTATCCAACAGACGATGAAGGCTTATTCCATCAAACATTTAAACTTAGCT
AAGAGCAAATTTTAAGTTCATTACACTGCCTTCACCACTATAGGACTCCT
CACTTGATGGTGTTTATCATCTGACCATATCAACTCTCCAAATGCATAAT
CCTTAGTAACACTTGCATTCTGAGCTTTAATGATGACTTTGAAGCTTTTC
TCCTCTCCAAAATTTATAAACTTCAAGCTCTTTGGGGCAATTGTCACTGA
AACTCCTTTCGGAGATTTTAAAAGAGCCTGGTAAGTTCCCGGAGAGCCAA
CGTTCTTGACTTTTCGCGTCACTGTGATTGAGCCGGAGAGTTTAGGGACT
GAGATGGAAGGGTAGTTGAAGTCTACCAGACTAATGGTATGGTTGGGGCA
TGTGTAAGTGTAGTTTTTTGAGAACCAAAAAATTTCTTTTTTGTTGTATC
CCAATGTACAAAGAAAGTTCAAGTAATCATTAGCCGTTAAGTCATAGACC
AATCCAGGATCCATCGCAAGGTTTGGCTGCACATGGCCTGCTCCATAACT
GAAGGGTGTTGCTTCGGCAAATGAAGCATTCAAAATTTGTTGCTTGTTGT
TATCGTGTGTTGATGCTGTGGTCATAATGGCTGATTGAATTGCTGCAGGA
CTCCAATCAGGATGGAGGATTTTCAGCAGGCTGGCAATACCAGAAATATG
AGGACATGACATTGACGTTCCTGATACAGAGTTGAATGGACTCCGGCGCT
T
back to top