FC871792

Overview
NameFC871792
Unique NameFC871792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13291 contig Csv1_Contig13291:59..689. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC871792 vs. ExPASy Swiss-Prot
Match: Y8111_DICDI (DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum GN=DDB_G0278111 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.070e-19
Identity = 53/115 (46.09%), Postives = 76/115 (66.09%), Query Frame = 3
Query:  132 QELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 476
            Q+L   QG G    ++Q Q+AQ   ++EA+ERRQ +L QIL+ +ARERL+RI +VKPEK+R +ED+I+R+AQ GQ+ E+V + +LISLLE                +R  +EDDD
Sbjct:    9 QQLSQMQGQGFDPEAQQRQEAQ---RQEANERRQGILIQILTPDARERLSRITIVKPEKSRQIEDLIIRAAQTGQLTERVDDAKLISLLE---QLSEKTKKTTITMKRRTIEDDD 117          
BLAST of FC871792 vs. ExPASy Swiss-Prot
Match: PDCD5_PONAB (Programmed cell death protein 5 OS=Pongo abelii GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 50/129 (38.76%), Postives = 76/129 (58.91%), Query Frame = 3
Query:   90 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 476
            MAD ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L+               RR+ +  D+D
Sbjct:    1 MADEELEALRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSDED 122          
BLAST of FC871792 vs. ExPASy Swiss-Prot
Match: PDCD5_HUMAN (Programmed cell death protein 5 OS=Homo sapiens GN=PDCD5 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 50/129 (38.76%), Postives = 76/129 (58.91%), Query Frame = 3
Query:   90 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 476
            MAD ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L+               RR+ +  D+D
Sbjct:    1 MADEELEALRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSDED 122          
BLAST of FC871792 vs. ExPASy Swiss-Prot
Match: PDCD5_MOUSE (Programmed cell death protein 5 OS=Mus musculus GN=Pdcd5 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 3.753e-17
Identity = 50/129 (38.76%), Postives = 76/129 (58.91%), Query Frame = 3
Query:   90 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 476
            MAD ELEA+R++R+ EL A+ G       +    AQ++AK+   E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE               RR+ +  D+D
Sbjct:    1 MADEELEALRKQRLAELQAKHG-------DPGDAAQQEAKQREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRRKVMDSDED 122          
BLAST of FC871792 vs. ExPASy Swiss-Prot
Match: YF69_SCHPO (Uncharacterized protein C23C4.09c OS=Schizosaccharomyces pombe GN=SPAC23C4.09c PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 51/127 (40.16%), Postives = 71/127 (55.91%), Query Frame = 3
Query:   96 DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 476
            D EL+AIRQ R+ +L A+ G  +  N      + +  +   DE RQ +LSQIL   AR+RL RIALV+ ++A  VE+++LR A+ GQI  K+SE  LI LLE                 R V +D+D
Sbjct:    2 DEELQAIRQARLAQLQAEHG-SAPSNIASGPSSNQQQQEVQDEMRQNLLSQILEHPARDRLRRIALVRKDRAEAVEELLLRMAKTGQISHKISEPELIELLEKISGEVSKRNETKIVINRRVQDDED 127          
BLAST of FC871792 vs. ExPASy Swiss-Prot
Match: PDCD5_BOVIN (Programmed cell death protein 5 OS=Bos taurus GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.426e-16
Identity = 49/129 (37.98%), Postives = 75/129 (58.14%), Query Frame = 3
Query:   90 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 476
            MA+ ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE               RR+ +  D+D
Sbjct:    1 MAEQELEALRKQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRRKVMDSDED 122          
BLAST of FC871792 vs. ExPASy Swiss-Prot
Match: Y708_METS3 (DNA-binding protein Msm_0708 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_0708 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.335e-14
Identity = 42/101 (41.58%), Postives = 68/101 (67.33%), Query Frame = 3
Query:  102 ELEAIRQRRMQELMAQQGV--GSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 398
            +L+ IR++RM EL A+Q    G  Q   Q Q  Q++A+R+ +E+++ +++QIL+TEAR RLA + L KPE    +E  +++SAQ G +  KV++E+L  LL
Sbjct:    3 DLDEIRRKRMAELEARQAAAQGQMQQQAQQQMQQQEAQRQFEEQKKALIAQILTTEARSRLANLKLTKPELVNQIEIQLIQSAQAGSLRGKVTDEQLKVLL 103          
BLAST of FC871792 vs. ExPASy Swiss-Prot
Match: Y1619_METKA (DNA-binding protein MK1619 OS=Methanopyrus kandleri GN=MK1619 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.277e-14
Identity = 44/106 (41.51%), Postives = 70/106 (66.04%), Query Frame = 3
Query:   90 MADPELEAIRQRRMQELMA--QQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLE 401
            M DPELE IR++++ EL    ++    +   E+ +KA E+A+R A      ML +IL+ EARERLAR+ L +P+ A+ VE+ +L+ AQ GQ+ EK+ E++L  +L+
Sbjct:    1 MTDPELERIRRKKIMELQRKLEESQEKKVEEEREKKALEEAQRRA------MLRRILTPEARERLARVRLARPQLAQAVENYLLQLAQTGQLKEKIDEDQLKRILK 100          
BLAST of FC871792 vs. ExPASy Swiss-Prot
Match: Y536_METPE (DNA-binding protein Mpal_0536 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=Mpal_0536 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 44/103 (42.72%), Postives = 59/103 (57.28%), Query Frame = 3
Query:   90 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 398
            M D EL  +R+RRM +L +QQ           Q+  ++ K+ A    QM L QIL  EARERL  I L KPE A GVE  ++  AQ G+I +K+S+ +L  LL
Sbjct:    1 MGDDELAELRRRRMAQLQSQQ---------MDQQQMDEEKQRAKSAMQMALMQILEPEARERLNTIRLTKPEFAAGVEQQLVMLAQSGRIKQKISDAQLKDLL 94          
BLAST of FC871792 vs. ExPASy Swiss-Prot
Match: Y1087_PYRFU (DNA-binding protein PF1087 OS=Pyrococcus furiosus GN=PF1087 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 43/102 (42.16%), Postives = 67/102 (65.69%), Query Frame = 3
Query:  102 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREA---DERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 398
            ++E IR+R++ EL        Q+   + QKAQE+A+R+    + + Q +L +IL+ EARERLAR+ LVKPE AR VE I+++  Q GQI EK+ + ++  +L
Sbjct:    4 DIEEIRRRKLMEL--------QKKYLEQQKAQEEAERQQALIEAQIQAILRRILTPEARERLARVKLVKPELARQVELILVQLYQAGQITEKIDDAKMKKIL 97          
The following BLAST results are available for this feature:
BLAST of FC871792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
Y8111_DICDI3.070e-1946.09DNA-binding protein DDB_G0278111 OS=Dictyostelium ... [more]
PDCD5_PONAB2.200e-1738.76Programmed cell death protein 5 OS=Pongo abelii GN... [more]
PDCD5_HUMAN2.200e-1738.76Programmed cell death protein 5 OS=Homo sapiens GN... [more]
PDCD5_MOUSE3.753e-1738.76Programmed cell death protein 5 OS=Mus musculus GN... [more]
YF69_SCHPO1.092e-1640.16Uncharacterized protein C23C4.09c OS=Schizosacchar... [more]
PDCD5_BOVIN1.426e-1637.98Programmed cell death protein 5 OS=Bos taurus GN=P... [more]
Y708_METS31.335e-1441.58DNA-binding protein Msm_0708 OS=Methanobrevibacter... [more]
Y1619_METKA2.277e-1441.51DNA-binding protein MK1619 OS=Methanopyrus kandler... [more]
Y536_METPE1.632e-1242.72DNA-binding protein Mpal_0536 OS=Methanosphaerula ... [more]
Y1087_PYRFU1.632e-1242.16DNA-binding protein PF1087 OS=Pyrococcus furiosus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3BG02FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3BG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871792 ID=FC871792; Name=FC871792; organism=Citrus sinensis; type=EST; length=631bp
CATTAAACGGCCACTAGAACCCCAAGGGGAAGGAAGCAGAAACAGAGTTC
AGAGTAGGCAGCGTTTGCTCATCGATCCATTCAAATCAAATGGCTGACCC
TGAACTAGAAGCAATTAGACAAAGAAGAATGCAAGAGCTCATGGCCCAAC
AAGGCGTGGGGAGTCAACAAAATTCTGAGCAGCATCAGAAAGCTCAGGAA
GATGCCAAGAGGGAGGCAGATGAACGGAGACAAATGATGCTTAGCCAGAT
TTTGTCAACCGAAGCACGTGAAAGACTTGCTCGAATTGCTTTGGTGAAAC
CCGAGAAGGCTAGAGGTGTTGAGGACATTATATTGAGATCTGCCCAAATG
GGTCAGATAGTTGAGAAGGTTTCTGAAGAGAGGCTCATATCATTGCTGGA
ACAGATTAACACCCAAACCACCAAACAGACCAAAGTCACAATCCAAAGGC
GCCGGAGTGTTTTGGAAGATGATGATTAACCTTGTGTAATTTCTGGTCAT
CATGGTGTGATACGCAATGCTATTCATGGTTATTGAAATTATGATGTGCT
TTTTCATTGTTATTGACGGTTCACCGTTTTGACATTATCTACAGGGTTTG
TGTTATTTAAAAAAAAAAAAAAAAAAAAAAA
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