CX671958

Overview
NameCX671958
Unique NameCX671958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671958_ssr17 microsatellite CX671958_ssr17:17..28. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671958_ssr29 microsatellite CX671958_ssr29:29..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4467 contig Csv1_Contig4467:544..1195. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.277e-95
Identity = 176/203 (86.70%), Postives = 186/203 (91.63%), Query Frame = 2
Query:   50 WLRRNNFPGADSS--IVDEVEKTVQSEAAVDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652
            WLRR   PG +S+   V EVEKTVQSE  +DP+S+DWKARLK+P  DTRYRTEDVTATKGNEFEDYFLKRELLMGI+EKGFERPSPIQEESIPIALTG DILARAKNGTGKTAAFCIP LEKIDQDNNVIQ VI+VPTRELALQTSQVCKELGKHL IQVMVTTGGTSLKDDIMRLYQPV LLVGTPGRILDL+KKGVC+LKD
Sbjct:   72 WLRRGQIPGGNSNGDAVVEVEKTVQSEV-IDPNSEDWKARLKLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKD 273          
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2)

HSP 1 Score: 333.183 bits (853), Expect = 7.251e-91
Identity = 165/201 (82.09%), Postives = 180/201 (89.55%), Query Frame = 2
Query:   50 WLRRNNFPGADSSIVDEVEKTVQSEAAVDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652
            W RR   PG D S +DEVEKTVQSEA  D +++DWKA LK+PP D RY+TEDVTATKGNEFEDYFLKR+LL GI+EKGFE+PSPIQEESIPIALTGSDILARAKNGTGKT AFCIP LEKID +NNVIQ VILVPTRELALQTSQVCKEL K+L I+VMVTTGGTSL+DDIMRLYQPV LLVGTPGRILDL+KKGVC+LKD
Sbjct:   97 WSRRAQLPG-DPSYIDEVEKTVQSEAISDSNNEDWKATLKLPPRDNRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKD 296          
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2)

HSP 1 Score: 331.643 bits (849), Expect = 2.110e-90
Identity = 170/205 (82.93%), Postives = 180/205 (87.80%), Query Frame = 2
Query:   50 WLRRNNFP--GADSSIVDEVEKTVQSEAA--VDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652
            WLRRN      A +    E +   QS A   +D SSQDWKA+LK+PP DTRYRTEDVTATKGNEFEDYFLKRELLMGI+EKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ+ N IQVVILVPTRELALQTSQVCKELGKHL IQVMVTTGGTSLKDDI+RLYQPV LLVGTPGRILDL+KKG+CILKD
Sbjct:   72 WLRRNQIAREAAGTDRNSEPKAVAQSPAVDGIDSSSQDWKAQLKLPPQDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQEKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIIRLYQPVHLLVGTPGRILDLTKKGICILKD 276          
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 4.700e-90
Identity = 168/201 (83.58%), Postives = 180/201 (89.55%), Query Frame = 2
Query:   50 WLRRNNFPGADSSIVDEVEKTVQSEAAVDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652
            WLRRN    A+++   E +K       +D SSQDWKA+LK+PP DTRYRTEDVTATKGNEFEDYFLKRELLMGI+EKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD N IQVVILVPTRELALQTSQVCKELGKHL IQVMVTTGGTSLKDDI+RLYQPV LLVGTPGRILDL+KKGVC+LK+
Sbjct:   68 WLRRNQI-AAEAAGASE-QKAPPVADGIDSSSQDWKAQLKLPPQDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQPVHLLVGTPGRILDLTKKGVCVLKN 266          
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2)

HSP 1 Score: 323.168 bits (827), Expect = 7.504e-88
Identity = 163/201 (81.09%), Postives = 178/201 (88.56%), Query Frame = 2
Query:   50 WLRRNNFPGADSSIVDEVEKTVQSEAAVDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652
            WLRR+    A +S  +   +T     AVD SS+DWKA+L +P  DTRYRTEDVTATKGNEFEDYFLKRELLMGI+EKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKID + N IQVVILVPTRELALQTSQVCKELGK+LNIQVMV+TGGTSLKDDIMRLYQPV LLVGTPGRILDL++KG+C+LKD
Sbjct:   90 WLRRDQATAAAAS-GEVAARTAAQLEAVDSSSEDWKAQLNLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRKGICVLKD 289          
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: RH12_ARATH (DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana GN=RH12 PE=2 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 1.672e-87
Identity = 158/201 (78.61%), Postives = 177/201 (88.06%), Query Frame = 2
Query:   50 WLRRNNFPGADSSIVDEVEKTVQSEAAVDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652
            W RR   PG  S+  + V++T Q EA+ D + QDWKA L++PP DTRY+T DVTATKGNEFEDYFLKR+LL GI+EKGFE+PSPIQEESIPIALTGSDILARAKNGTGKT AFCIP LEKID +NNVIQ +ILVPTRELALQTSQVCKEL K+LNIQVMVTTGGTSL+DDIMRL+QPV LLVGTPGRILDL+KKGVC+LKD
Sbjct:   66 WSRRPQLPGNASNANEVVQQTTQPEASSDANGQDWKATLRLPPPDTRYQTADVTATKGNEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKD 266          
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: DHH1_BOTFB (ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain B05.10) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.377e-65
Identity = 127/189 (67.20%), Postives = 152/189 (80.42%), Query Frame = 2
Query:   89 IVDEVEKTVQSEAAVDPSSQD-WKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652
            + DE+   + +    D +S D WKA L IP  DTR +TEDVTATKG EFED+ +KRELLMGIFE G+E+PSPIQEE+IP+ALTG DILARAKNGTGKTAAF IPALE+I+  N  +Q +ILVPTRELALQTSQVCK LG+HL I VMVTTGGT+L+DDI+RL +PV ++VGTPGRILDL+ K V  L +
Sbjct:    1 MADELATKLAATQINDNASPDNWKAGLNIPAKDTRQQTEDVTATKGLEFEDFSIKRELLMGIFEMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKNTKVQCLILVPTRELALQTSQVCKTLGQHLGINVMVTTGGTTLRDDILRLQEPVHIIVGTPGRILDLAGKNVADLSE 189          
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: DDX6_DICDI (Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum GN=ddx6 PE=3 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.799e-65
Identity = 120/168 (71.43%), Postives = 146/168 (86.90%), Query Frame = 2
Query:  149 DWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652
            +WK++LK+PP D R +TEDVTAT+GN+F+D  LKR+LL GIFEKG+ +PSPIQE++IPIAL G DI+ARAKNGTGKTA+F IPALEK D   +VIQV+ILVPTRELALQTSQVCKELGK++N+QVM +TGGTSLKDDIMRLY PV +LV TPGR+LDL++K V  L +
Sbjct:   24 NWKSQLKLPPRDERRQTEDVTATEGNDFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRLYNPVHILVATPGRVLDLAQKNVANLSN 191          
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: DHH1_YARLI (ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica GN=DHH1 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.166e-64
Identity = 122/168 (72.62%), Postives = 141/168 (83.93%), Query Frame = 2
Query:  149 DWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652
            +WK  L +P  DTR++TEDVTATKG  FED+FLKRELLMGIFE GFE PSPIQEE+IPIAL G DILARAKNGTGKTAAF IPAL++++   N IQ +I+VPTRELALQTSQVCK LGKHL I+VMVTTGGT+L+DDIMRL   V +LVGTPGR+LDL+ KGV  L +
Sbjct:    3 EWKESLNVPKKDTRHKTEDVTATKGTGFEDFFLKRELLMGIFEAGFENPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPALQQVNPKVNKIQALIMVPTRELALQTSQVCKTLGKHLGIKVMVTTGGTNLRDDIMRLEDTVHVLVGTPGRVLDLAGKGVADLSE 170          
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: DHH1_PHANO (ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria nodorum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.523e-64
Identity = 126/188 (67.02%), Postives = 149/188 (79.26%), Query Frame = 2
Query:   83 SSIVDEVEKTVQSEAAVDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCIL 646
            S I +++  T  S+A+    + DWK  LK P  D R +TEDVTATKG EFED+F+KREL+MGIFE GFE+PSPIQEE+IP+ALTG DILARAKNGTGKTAAF IP LE+++   +  Q +ILVPTRELALQTSQVCK LGKHL I VMV+TGGT LKDDI+RL  PV ++VGTPGRILDL+ KGV  L
Sbjct:    3 SEITNQMASTKLSDASASTLA-DWKEGLKAPAKDARPQTEDVTATKGLEFEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERVNPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVSTGGTGLKDDIIRLSDPVHIIVGTPGRILDLAGKGVADL 189          
The following BLAST results are available for this feature:
BLAST of CX671958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH8_ARATH1.277e-9586.70DEAD-box ATP-dependent RNA helicase 8 OS=Arabidops... [more]
RH6_ARATH7.251e-9182.09DEAD-box ATP-dependent RNA helicase 6 OS=Arabidops... [more]
RH8_ORYSJ2.110e-9082.93DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sat... [more]
RH6_ORYSJ4.700e-9083.58DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sat... [more]
RH12_ORYSJ7.504e-8881.09DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sa... [more]
RH12_ARATH1.672e-8778.61DEAD-box ATP-dependent RNA helicase 12 OS=Arabidop... [more]
DHH1_BOTFB1.377e-6567.20ATP-dependent RNA helicase dhh1 OS=Botryotinia fuc... [more]
DDX6_DICDI1.799e-6571.43Probable ATP-dependent RNA helicase ddx6 OS=Dictyo... [more]
DHH1_YARLI1.166e-6472.62ATP-dependent RNA helicase DHH1 OS=Yarrowia lipoly... [more]
DHH1_PHANO1.523e-6467.02ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria n... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14B05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14B05-C10-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671958 ID=CX671958; Name=CX671958; organism=Citrus sinensis; type=EST; length=652bp
CCACAACCAGCAATTTCAGCAGCAGCAGCAACAACAACAACAGCAGCAGT
GGCTACGGCGGAACAATTTTCCTGGCGCTGATTCCTCCATTGTTGATGAG
GTCGAGAAGACCGTACAGTCCGAAGCTGCCGTCGACCCGAGTTCCCAAGA
TTGGAAGGCACGGCTAAAGATACCACCCGCTGATACACGCTACAGAACTG
AGGATGTTACGGCCACAAAAGGAAATGAATTTGAGGACTATTTTCTTAAA
CGTGAGCTACTTATGGGAATATTTGAAAAAGGGTTTGAAAGGCCATCACC
TATTCAGGAAGAAAGTATTCCTATTGCTTTAACGGGTAGCGATATTCTTG
CCAGAGCTAAGAATGGTACCGGGAAGACAGCTGCCTTCTGCATTCCAGCA
TTGGAAAAGATTGACCAAGATAACAATGTGATTCAAGTTGTTATCCTTGT
TCCAACAAGAGAGTTGGCTCTTCAGACATCCCAAGTCTGTAAGGAGCTGG
GGAAGCATTTGAATATTCAAGTCATGGTTACCACTGGTGGAACCAGTCTT
AAGGATGATATTATGCGTTTGTATCAACCTGTTCAATTGCTTGTTGGAAC
TCCTGGAAGAATACTAGATCTTTCTAAGAAGGGTGTTTGCATTTTGAAAG
AT
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