CX671958
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1) HSP 1 Score: 348.977 bits (894), Expect = 1.277e-95 Identity = 176/203 (86.70%), Postives = 186/203 (91.63%), Query Frame = 2 Query: 50 WLRRNNFPGADSS--IVDEVEKTVQSEAAVDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652 WLRR PG +S+ V EVEKTVQSE +DP+S+DWKARLK+P DTRYRTEDVTATKGNEFEDYFLKRELLMGI+EKGFERPSPIQEESIPIALTG DILARAKNGTGKTAAFCIP LEKIDQDNNVIQ VI+VPTRELALQTSQVCKELGKHL IQVMVTTGGTSLKDDIMRLYQPV LLVGTPGRILDL+KKGVC+LKD Sbjct: 72 WLRRGQIPGGNSNGDAVVEVEKTVQSEV-IDPNSEDWKARLKLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKD 273
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2) HSP 1 Score: 333.183 bits (853), Expect = 7.251e-91 Identity = 165/201 (82.09%), Postives = 180/201 (89.55%), Query Frame = 2 Query: 50 WLRRNNFPGADSSIVDEVEKTVQSEAAVDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652 W RR PG D S +DEVEKTVQSEA D +++DWKA LK+PP D RY+TEDVTATKGNEFEDYFLKR+LL GI+EKGFE+PSPIQEESIPIALTGSDILARAKNGTGKT AFCIP LEKID +NNVIQ VILVPTRELALQTSQVCKEL K+L I+VMVTTGGTSL+DDIMRLYQPV LLVGTPGRILDL+KKGVC+LKD Sbjct: 97 WSRRAQLPG-DPSYIDEVEKTVQSEAISDSNNEDWKATLKLPPRDNRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKD 296
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2) HSP 1 Score: 331.643 bits (849), Expect = 2.110e-90 Identity = 170/205 (82.93%), Postives = 180/205 (87.80%), Query Frame = 2 Query: 50 WLRRNNFP--GADSSIVDEVEKTVQSEAA--VDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652 WLRRN A + E + QS A +D SSQDWKA+LK+PP DTRYRTEDVTATKGNEFEDYFLKRELLMGI+EKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ+ N IQVVILVPTRELALQTSQVCKELGKHL IQVMVTTGGTSLKDDI+RLYQPV LLVGTPGRILDL+KKG+CILKD Sbjct: 72 WLRRNQIAREAAGTDRNSEPKAVAQSPAVDGIDSSSQDWKAQLKLPPQDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQEKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIIRLYQPVHLLVGTPGRILDLTKKGICILKD 276
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1) HSP 1 Score: 330.487 bits (846), Expect = 4.700e-90 Identity = 168/201 (83.58%), Postives = 180/201 (89.55%), Query Frame = 2 Query: 50 WLRRNNFPGADSSIVDEVEKTVQSEAAVDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652 WLRRN A+++ E +K +D SSQDWKA+LK+PP DTRYRTEDVTATKGNEFEDYFLKRELLMGI+EKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD N IQVVILVPTRELALQTSQVCKELGKHL IQVMVTTGGTSLKDDI+RLYQPV LLVGTPGRILDL+KKGVC+LK+ Sbjct: 68 WLRRNQI-AAEAAGASE-QKAPPVADGIDSSSQDWKAQLKLPPQDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQPVHLLVGTPGRILDLTKKGVCVLKN 266
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2) HSP 1 Score: 323.168 bits (827), Expect = 7.504e-88 Identity = 163/201 (81.09%), Postives = 178/201 (88.56%), Query Frame = 2 Query: 50 WLRRNNFPGADSSIVDEVEKTVQSEAAVDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652 WLRR+ A +S + +T AVD SS+DWKA+L +P DTRYRTEDVTATKGNEFEDYFLKRELLMGI+EKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKID + N IQVVILVPTRELALQTSQVCKELGK+LNIQVMV+TGGTSLKDDIMRLYQPV LLVGTPGRILDL++KG+C+LKD Sbjct: 90 WLRRDQATAAAAS-GEVAARTAAQLEAVDSSSEDWKAQLNLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRKGICVLKD 289
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: RH12_ARATH (DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana GN=RH12 PE=2 SV=1) HSP 1 Score: 322.013 bits (824), Expect = 1.672e-87 Identity = 158/201 (78.61%), Postives = 177/201 (88.06%), Query Frame = 2 Query: 50 WLRRNNFPGADSSIVDEVEKTVQSEAAVDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652 W RR PG S+ + V++T Q EA+ D + QDWKA L++PP DTRY+T DVTATKGNEFEDYFLKR+LL GI+EKGFE+PSPIQEESIPIALTGSDILARAKNGTGKT AFCIP LEKID +NNVIQ +ILVPTRELALQTSQVCKEL K+LNIQVMVTTGGTSL+DDIMRL+QPV LLVGTPGRILDL+KKGVC+LKD Sbjct: 66 WSRRPQLPGNASNANEVVQQTTQPEASSDANGQDWKATLRLPPPDTRYQTADVTATKGNEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKD 266
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: DHH1_BOTFB (ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain B05.10) GN=dhh1 PE=3 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 1.377e-65 Identity = 127/189 (67.20%), Postives = 152/189 (80.42%), Query Frame = 2 Query: 89 IVDEVEKTVQSEAAVDPSSQD-WKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652 + DE+ + + D +S D WKA L IP DTR +TEDVTATKG EFED+ +KRELLMGIFE G+E+PSPIQEE+IP+ALTG DILARAKNGTGKTAAF IPALE+I+ N +Q +ILVPTRELALQTSQVCK LG+HL I VMVTTGGT+L+DDI+RL +PV ++VGTPGRILDL+ K V L + Sbjct: 1 MADELATKLAATQINDNASPDNWKAGLNIPAKDTRQQTEDVTATKGLEFEDFSIKRELLMGIFEMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKNTKVQCLILVPTRELALQTSQVCKTLGQHLGINVMVTTGGTTLRDDILRLQEPVHIIVGTPGRILDLAGKNVADLSE 189
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: DDX6_DICDI (Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum GN=ddx6 PE=3 SV=1) HSP 1 Score: 248.825 bits (634), Expect = 1.799e-65 Identity = 120/168 (71.43%), Postives = 146/168 (86.90%), Query Frame = 2 Query: 149 DWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652 +WK++LK+PP D R +TEDVTAT+GN+F+D LKR+LL GIFEKG+ +PSPIQE++IPIAL G DI+ARAKNGTGKTA+F IPALEK D +VIQV+ILVPTRELALQTSQVCKELGK++N+QVM +TGGTSLKDDIMRLY PV +LV TPGR+LDL++K V L + Sbjct: 24 NWKSQLKLPPRDERRQTEDVTATEGNDFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRLYNPVHILVATPGRVLDLAQKNVANLSN 191
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: DHH1_YARLI (ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica GN=DHH1 PE=3 SV=1) HSP 1 Score: 246.128 bits (627), Expect = 1.166e-64 Identity = 122/168 (72.62%), Postives = 141/168 (83.93%), Query Frame = 2 Query: 149 DWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652 +WK L +P DTR++TEDVTATKG FED+FLKRELLMGIFE GFE PSPIQEE+IPIAL G DILARAKNGTGKTAAF IPAL++++ N IQ +I+VPTRELALQTSQVCK LGKHL I+VMVTTGGT+L+DDIMRL V +LVGTPGR+LDL+ KGV L + Sbjct: 3 EWKESLNVPKKDTRHKTEDVTATKGTGFEDFFLKRELLMGIFEAGFENPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPALQQVNPKVNKIQALIMVPTRELALQTSQVCKTLGKHLGIKVMVTTGGTNLRDDIMRLEDTVHVLVGTPGRVLDLAGKGVADLSE 170
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: DHH1_PHANO (ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria nodorum GN=DHH1 PE=3 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 1.523e-64 Identity = 126/188 (67.02%), Postives = 149/188 (79.26%), Query Frame = 2 Query: 83 SSIVDEVEKTVQSEAAVDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCIL 646 S I +++ T S+A+ + DWK LK P D R +TEDVTATKG EFED+F+KREL+MGIFE GFE+PSPIQEE+IP+ALTG DILARAKNGTGKTAAF IP LE+++ + Q +ILVPTRELALQTSQVCK LGKHL I VMV+TGGT LKDDI+RL PV ++VGTPGRILDL+ KGV L Sbjct: 3 SEITNQMASTKLSDASASTLA-DWKEGLKAPAKDARPQTEDVTATKGLEFEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERVNPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVSTGGTGLKDDIIRLSDPVHIIVGTPGRILDLAGKGVADL 189 The following BLAST results are available for this feature:
BLAST of CX671958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671958 ID=CX671958; Name=CX671958; organism=Citrus sinensis; type=EST; length=652bpback to top |