CX671952

Overview
NameCX671952
Unique NameCX671952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671952 vs. ExPASy Swiss-Prot
Match: UTP15_XENLA (U3 small nucleolar RNA-associated protein 15 homolog OS=Xenopus laevis GN=utp15 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.567e-15
Identity = 58/198 (29.29%), Postives = 93/198 (46.97%), Query Frame = -3
Query:  250 GTSNGTIFAGRRKKKENVESGIENFWSLGRVETQKPMLRPTYFRYFQRGQSDKPSEGDYLVVRPKKLKLGEHDKLLKKFRHKEALVSVLNG----KNPENVVAVMEELVARKKLMKCVSNLDNEELGLLLSFMQKHSTVPRYSGLLIGLMEKVLEMRAKDIRTCDALKGHIRNLKRSVEEEIRIQQSLQEIQGIISPL 831
            G +NG +    RK +E             R   Q    R   +R F RG+   P + D  V +P +  L ++D+LLK F   +AL +VL      K PE  VAVM EL  R  L   ++  + +EL  LL F+ KH   P +  +L+ + E ++++ +  +     +      L+  VE+EI  Q+ L +I G++  L
Sbjct:  307 GMTNGVLNIKHRKPEE-------------RKPLQSTTKRHPRYRVFVRGKDYMPKQDDIYVSKPVREHLKKYDQLLKGFHMSKALDAVLQSQIRTKKPEVTVAVMNELKRRGTLKNALAGRNEKELSDLLIFLLKHLVNPLFLPILLNVAEHIIDIYSPVVGQSSVIHKQFIRLQEVVEKEINYQEELLKILGMMDTL 491          
BLAST of CX671952 vs. ExPASy Swiss-Prot
Match: UTP15_DANRE (U3 small nucleolar RNA-associated protein 15 homolog OS=Danio rerio GN=utp15 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.686e-14
Identity = 59/198 (29.80%), Postives = 99/198 (50.00%), Query Frame = -3
Query:  250 GTSNGTIFAGRRKKKENVESGIENFWSLGRVETQKPMLRPTYFRYFQRGQSDKPSEGDYLVVRPKKLKLGEHDKLLKKFRHKEALVSVLNG----KNPENVVAVMEELVARKKLMKCVSNLDNEELGLLLSFMQKHSTVPRYSGLLIGLMEKVLEMRAKDIRTCDALKGHIRNLKRSVEEEIRIQQSLQEIQGIISPL 831
            G +NG +    RK KE  E+            T +    P+Y R+F +G++  P + D+LV +P +  L ++DK LK+F   +AL + L        PE  VAV+ EL  R  L   ++  D   L  +L+F+ KH T PR+S  L+ + + VL++  + I     ++  ++ L   +  E  +QQ L ++ GI+  L
Sbjct:  305 GMTNGVLSIRHRKHKEEKEA-----------LTGRRKRGPSY-RFFVKGKNFVPRQDDFLVSKPVRQHLQKYDKQLKRFEVSKALDTALETWTRTTKPEVTVAVIMELNRRGTLKNALAGRDEVSLTKILNFLLKHITDPRFSRPLLTVGDIVLDLYQQVIPQSPVVERLLQRLYEILGREAELQQELLQVLGILDTL 490          
BLAST of CX671952 vs. ExPASy Swiss-Prot
Match: UTP15_XENTR (U3 small nucleolar RNA-associated protein 15 homolog OS=Xenopus tropicalis GN=utp15 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.202e-14
Identity = 55/198 (27.78%), Postives = 94/198 (47.47%), Query Frame = -3
Query:  250 GTSNGTIFAGRRKKKENVESGIENFWSLGRVETQKPMLRPTYFRYFQRGQSDKPSEGDYLVVRPKKLKLGEHDKLLKKFRHKEALVSVLN----GKNPENVVAVMEELVARKKLMKCVSNLDNEELGLLLSFMQKHSTVPRYSGLLIGLMEKVLEMRAKDIRTCDALKGHIRNLKRSVEEEIRIQQSLQEIQGIISPL 831
            G +NG +    RK +E             R + Q    R   +R F RG+   P + D  + +P    L ++DKLLK F   EAL +VL      + PE  VAVM EL  R  L   ++  + ++L  LL F+ KH   P++  +L+ + E ++++ +  +     +      L+  +E+EI  Q+ L ++ G++  L
Sbjct:  307 GMTNGVLNIKHRKPEE-------------RKQLQSTTKRHPRYRVFVRGKDYMPKQDDIFISKPVIAHLKKYDKLLKGFHMTEALDTVLQPQIRNQRPEVTVAVMNELKRRGTLKNALAGRNEKQLSDLLIFLLKHLVNPQFVPILLNVAEHIIDIYSPVVGQSSVIYKQFIRLQEVLEKEINYQEELLKMLGMMDTL 491          
BLAST of CX671952 vs. ExPASy Swiss-Prot
Match: UTP15_CHICK (U3 small nucleolar RNA-associated protein 15 homolog OS=Gallus gallus GN=UTP15 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.905e-14
Identity = 53/198 (26.77%), Postives = 100/198 (50.51%), Query Frame = -3
Query:  250 GTSNGTIFAGRRKKKENVESGIENFWSLGRVETQKPMLRPTYFRYFQRGQSDKPSEGDYLVVRPKKLKLGEHDKLLKKFRHKEALVSVLNGK----NPENVVAVMEELVARKKLMKCVSNLDNEELGLLLSFMQKHSTVPRYSGLLIGLMEKVLEMRAKDIRTCDALKGHIRNLKRSVEEEIRIQQSLQEIQGIISPL 831
            G +NG +    RK +E+ E            ++QK   R   +R + +G++  P + D+ V +P +  + ++DKLLK F+  +AL +VL        PE  VAVM+EL  R  L   ++  D +++ LLL+F+ +    PR++ +LI + + + ++    +     +      L+ ++  EI  Q+ L E+ G++  L
Sbjct:  307 GMTNGVLNVKHRKPEESKE------------KSQKK--RQPAYRTYVKGRNYMPKQEDFFVSKPGRCIMRKYDKLLKSFQSSKALDAVLEPHIRLYTPEVTVAVMQELNRRGTLRSALAGRDEKQISLLLTFVTRRVIEPRFTPVLITVADMITDIYQPVVGQSALVDKQFLRLQEAIGREIDYQEELLEVLGMMDAL 490          
The following BLAST results are available for this feature:
BLAST of CX671952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UTP15_XENLA7.567e-1529.29U3 small nucleolar RNA-associated protein 15 homol... [more]
UTP15_DANRE1.686e-1429.80U3 small nucleolar RNA-associated protein 15 homol... [more]
UTP15_XENTR2.202e-1427.78U3 small nucleolar RNA-associated protein 15 homol... [more]
UTP15_CHICK4.905e-1426.77U3 small nucleolar RNA-associated protein 15 homol... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14B02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14B02-C4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671952 ID=CX671952; Name=CX671952; organism=Citrus sinensis; type=EST; length=833bp
TTTTTTCAGAGAATTTAACTGTAGAAAATAACATATATTGATCAAATTCA
AACTTTTCCTACCCCTTTTTAGTACAATAGATAACTTCCATTTAAACATC
TTAAATACCCAGGCTAATTTTGGATAAAACAAAACTGCAAAACCTCCTCA
TGGAAAAAAAAAAAAAAAATCTCAAGATGGTGAGTAAATCACAAAGTACC
GATAAACAACAGAAAAGCTAATAAATCATCTCTTTCCAGCAATTCTTAAT
AAAGGAGAGATGATACCCTGTATCTCTTGCAACGATTGTTGTATCCTTAT
CTCTTCCTCGACTGACCGCTTAAGATTTCTTATATGACCCTTCAACGCAT
CACAAGTTCTAATGTCTTTGGCCCGCATCTCAAGAACCTTTTCCATCAAA
CCTATCAACAACCCCGAGTATCTAGGAACTGTTGAATGCTTCTGCATGAA
ACTCAACAGCAACCCAAGCTCCTCATTATCCAAATTTGAAACACATTTCA
TCAACTTCTTCCTCGCCACTAGCTCCTCCATGACAGCCACCACATTTTCC
GGATTCTTTCCATTCAACACAGACACCAATGCTTCCTTGTGCCTAAACTT
CTTTAATAACTTATCATGCTCCCCCAATTTCAACTTCTTTGGCCTCACAA
CTAAATAATCCCCTTCACTTGGCTTGTCACTTTGCCCTCTTTGAAAATAT
CTGAAATAAGTAGGCCTCAACATTGGCTTCTGAGTCTCCACTCTCCCTAA
ACTCCAAAAATTCTCAATTCCACTCTCAACATTTTCCTTCTTCTTCCTCC
TCCCAGCAAATATAGTCCCATTAGACGTGCCTA
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