CX671948

Overview
NameCX671948
Unique NameCX671948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671948 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.478e-22
Identity = 65/150 (43.33%), Postives = 82/150 (54.67%), Query Frame = 2
Query:   47 MVNASADITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIARGLVVHSSP-------------SPDPGDGVAWGTIGL 421
            MV A A ++ + G  GT+ FS EG GPTTV G++SGL PG H   +H  G+ +N  +STGP F PAG +           G L NITV  +G A+F I  K IPL+G NSVI R +VVH  P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVACGIIGL 150          
BLAST of CX671948 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.155e-22
Identity = 63/150 (42.00%), Postives = 83/150 (55.33%), Query Frame = 2
Query:   47 MVNASADITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIARGLVVHSSP-------------SPDPGDGVAWGTIGL 421
            MV A   ++ + G  GTV F+ EGSGPTTV G++SGL PG H   +H  G+ +N  +STGP F PAG +           G L NITV  +G ATF I  + IPL+G NS++ R +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGVIGL 150          
BLAST of CX671948 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.220e-21
Identity = 59/129 (45.74%), Postives = 77/129 (59.69%), Query Frame = 2
Query:   47 MVNASADITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIARGLVVHSSPSPDPGDG 397
            MV A A +TG+ G +GTV F+ EG GPTT+ GSLSGL PG H   +H  G+ +N  +STGP F PAG +           G L N+TV  +G   F +  + IPL+G NSV+ R +VVH+  S D G G
Sbjct:    1 MVKAVAVLTGSEGVQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHAD-SDDLGKG 128          
BLAST of CX671948 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.057e-21
Identity = 63/150 (42.00%), Postives = 82/150 (54.67%), Query Frame = 2
Query:   47 MVNASADITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIARGLVVHSSP-------------SPDPGDGVAWGTIGL 421
            MV A A ++ +N   GT++FS EG+GPTTV G+L+GL PG H   IH  G+ +N  ISTGP F P G +           G L NI V  +G  +F I    IPL+GTNS+I R +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLSNSNEVSGTINFSQEGNGPTTVTGTLAGLKPGLHGFHIHALGDTTNGCISTGPHFNPNGKEHGAPEDETRHAGDLGNINVGDDGTVSFTITDNHIPLTGTNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CX671948 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.057e-21
Identity = 62/150 (41.33%), Postives = 81/150 (54.00%), Query Frame = 2
Query:   47 MVNASADITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIARGLVVHSSP-------------SPDPGDGVAWGTIGL 421
            MV A A +  + G KGT+ F+ EG GPTTV GS+SGL PG H   +H  G+ +N  +STGP F PAG +           G L N+TV  +G     I  + IPLSG+NS+I R +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CX671948 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.033e-20
Identity = 56/129 (43.41%), Postives = 75/129 (58.14%), Query Frame = 2
Query:   47 MVNASADITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIARGLVVHSSPSPDPGDG 397
            MV   A ++ + G  GT+ F+ EG GPTTV G++SGL PG H   +H  G+ +N  +STGP F PAG +           G L N+TV  +G A F I  K IPL+G +S+I R +VVH+ P  D G G
Sbjct:    1 MVKGVAVLSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPD-DLGKG 128          
BLAST of CX671948 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.128e-20
Identity = 59/150 (39.33%), Postives = 81/150 (54.00%), Query Frame = 2
Query:   47 MVNASADITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIARGLVVHSSP-------------SPDPGDGVAWGTIGL 421
            MV A A +  + G KGT+ FS EG GPT+V GS+SGL PG H   +H  G+ +N  +STGP F P G +           G L NIT  ++G+A   +  + IPL+G +S+I R +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CX671948 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 8.746e-20
Identity = 58/150 (38.67%), Postives = 81/150 (54.00%), Query Frame = 2
Query:   47 MVNASADITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIARGLVVHSSP-------------SPDPGDGVAWGTIGL 421
            MV A A +  + G KGT+ F+ EG GPTTV GS+SGL PG H   +H  G+ +N  +STGP + PA  +           G L N+T  ++G+A   +  + IPL+G NS+I R +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 150          
BLAST of CX671948 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.142e-19
Identity = 60/150 (40.00%), Postives = 80/150 (53.33%), Query Frame = 2
Query:   47 MVNASADITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIARGLVVHSSP-------------SPDPGDGVAWGTIGL 421
            M  A   ++ + G  GTV F+ EG GPTTV G++SGL PG H   +H  G+ +N  +STGP + P G +           G L NITV  +G ATF I  + IPLSG NS++ R +VVH+ P             + + G  VA G IGL
Sbjct:    1 MGKAVVVLSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CX671948 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.492e-19
Identity = 55/129 (42.64%), Postives = 75/129 (58.14%), Query Frame = 2
Query:   47 MVNASADITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIARGLVVHSSPSPDPGDG 397
            MV A A +  + G  GT+ F+ +G+ PTTV G++SGL PG H   +H  G+ +N  +STGP + PAG +           G L NITV  +G A+F I  K IPL+G  S+I R +VVH+ P  D G G
Sbjct:    1 MVKAVAVLNSSEGVSGTILFTQDGAAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPD-DLGKG 128          
The following BLAST results are available for this feature:
BLAST of CX671948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SODC_IPOBA5.478e-2243.33Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC1_MESCR7.155e-2242.00Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC_ZANAE1.220e-2145.74Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC_PEA6.057e-2142.00Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC_ANACO6.057e-2141.33Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC_PAUKA1.033e-2043.41Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC2_ORYSJ5.128e-2039.33Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC4_MAIZE8.746e-2038.67Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC_SPIOL1.142e-1940.00Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC2_SOLLC1.492e-1942.64Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14A12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14A12-A24-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671948 ID=CX671948; Name=CX671948; organism=Citrus sinensis; type=EST; length=654bp
GCTTCATTTTCCTCTCTCTAAGGGCGTTGTGATATCACACAGCACAATGG
TGAATGCTTCTGCAGATATTACTGGAACTAACGGTCGCAAGGGAACTGTT
TCCTTTAGCGTTGAAGGAAGTGGTCCAACAACTGTGAAAGGAAGCCTCTC
TGGTTTGCCGCCTGGTGATCACGCACTCATTATTCACACTTACGGAAACA
TAAGCAATGATTGGATATCAACTGGACCCCCTTTTAAACCTGCTGGAGCT
GACGGTTTTTTAGAAAACATCACTGTTACTAGTGAGGGTATTGCTACTTT
TGAAATTTACAAGACGATTCCTCTTTCTGGAACAAATTCCGTTATCGCAA
GGGGTCTTGTAGTCCACTCAAGTCCCAGTCCAGATCCTGGTGATGGAGTA
GCTTGGGGCACCATCGGTCTCAGTTATTGAAGGGGCTTCTCTCCATACCA
TAATAAATACATTTGACATGATGTCGAATGTGTCTTGAATACTTAATAAA
ATAAATAATATGTTGTACGAATCAAAATCTGGCTATAATAAAATAAATAA
AAGCCAGGGCATGTCTGTAATATGTTGTACCTTGTAGAATGTGGCCGTAA
ATAAAATAAATAAAAGTCCAGGCGTGCTGTGCACTGTCCTTAAGACTAAA
AAAA
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