CX671944

Overview
NameCX671944
Unique NameCX671944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671944_ssr13 microsatellite CX671944_ssr13:13..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671944 vs. ExPASy Swiss-Prot
Match: RN160_HUMAN (RING finger protein 160 OS=Homo sapiens GN=RNF160 PE=1 SV=5)

HSP 1 Score: 87.8113 bits (216), Expect = 7.236e-17
Identity = 51/159 (32.08%), Postives = 84/159 (52.83%), Query Frame = 2 
Query:  248 IDSEVAQHLKRLARKDPITXXXXXXXXXXXXXXXPGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENL-KLTPQNLSDKAIALDELEE 721
            +DS+    L++L++KD  T                 + +  ++P W   + ++ LD+ R VR AT +    L++ V + LAP+LKSLMG W  +Q D+ +  + AAK + +AAFP   K+ +A+  C  E+   L+++L K TP  LSD     +E  E
Sbjct:   61 VDSDFRMVLRKLSKKDVTTKLKAMQEFGTMCTERDTETVKGVLPYWPRIFCKISLDHDRRVREATQQAFEKLILKVKKQLAPYLKSLMGYWLMAQCDTYTPAAFAAKDAFEAAFP-PSKQPEAIAFCKDEITSVLQDHLIKETPDTLSDPQTVPEEERE 218
[Close]
BLAST of CX671944 vs. ExPASy Swiss-Prot
Match: RN160_MOUSE (RING finger protein 160 OS=Mus musculus GN=Rnf160 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.750e-16
Identity = 50/159 (31.45%), Postives = 83/159 (52.20%), Query Frame = 2 
Query:  248 IDSEVAQHLKRLARKDPITXXXXXXXXXXXXXXXPGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEEN-LKLTPQNLSDKAIALDELEE 721
            +DS+    L++L++KD  T                 + +  ++P W   + ++ LD+ R VR AT +    L++ V + LAP+LKS+MG W  +Q D+    + AAK + +AAFP   K+ +A+  C  E+   L+++ LK TP  LSD     +E  E
Sbjct:   61 VDSDFRMVLRKLSKKDVTTKLKAMQEFGIMCTERDTEAVKGVLPYWPRIFCKISLDHDRRVREATQQAFEKLILKVKKHLAPYLKSVMGYWLMAQCDTYPPAALAAKDAFEAAFP-PSKQPEAIAFCKEEITTVLQDHLLKETPDTLSDPQTVPEEERE 218
The following BLAST results are available for this feature:
BLAST of CX671944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RN160_HUMAN7.236e-1732.08RING finger protein 160 OS=Homo sapiens GN=RNF160 ... [more]
RN160_MOUSE2.750e-1631.45RING finger protein 160 OS=Mus musculus GN=Rnf160 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14A10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14A10-A20-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671944 ID=CX671944; Name=CX671944; organism=Citrus sinensis; type=EST; length=782bp
CGGTCTTCGCCGTCTCTCTCTCTCTCTGTGGTTACAAAAACGACTGCGTT
TTTGTTTATGAGAAAACAGAATGGGGAAACAGAAAGGAGATGGAGGTAGA
GCCAAGGCTCGTCCTTCAAGCAGCAGTCTCGCTGCTTCGCTGCTGCCGTC
GGCTTCAGCTGGAGTAGCCGTCGGATTCGGTGGCTACGTCGGTAGTTCCC
GGCTCGAATCTACTCTATCTAGCGAAGAATCAAGCCCCTATTTGGACATA
GATAGCGAGGTGGCACAACATTTGAAGAGGCTTGCTAGGAAAGACCCTAT
CACCAAGCTGAAGGCTTTGTCATTTCTGTCTGCTCTGCTTAAGGAAAAAC
CTGGAAAGGACATAGCACCAATCATTCCTCAATGGGCATTTGAATACAAA
AGGCTGTTGCTGGATTATAGTAGAGAAGTTCGGCGAGCCACTCATGAGAT
GATGACTAGTCTTGTCATCACAGTTGGGAGAGATTTGGCTCCGCATCTGA
AGTCTTTGATGGGTCCGTGGTGGTTTTCTCAGTTTGATTCAAATTCTGAA
GTTTCTCAAGCTGCAAAGCGATCATTACAGGCAGCCTTTCCTGCCCAGGA
AAAGAGATTAGATGCTTTGCTTATATGCGCAACTGAGGTATTCATATATT
TGGAAGAAAACCTCAAGCTTACACCTCAAAATCTGTCTGATAAAGCCATT
GCCTTGGACGAGTTGGAAGAGATGCACCAGCAGGTGATATCTTCATCATT
GCTGGCATTGGCAACACTTCTTGATGTTTTAG
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