CX671939

Overview
NameCX671939
Unique NameCX671939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5118 contig Csv1_Contig5118:640..1451. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671939 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 6.226e-75
Identity = 134/165 (81.21%), Postives = 149/165 (90.30%), Query Frame = -3
Query:  316 KAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGALEARNLESV 810
            K E LAGNTWQHL+T+PSFADAAMGRIAQ TKV AEGGYEKIFRQTFET PEEQL NS+ACYLSTSAGPVMG+LY+S+AKLA+CSDNPLSYK+  QTEWSYYKVVIPLHQL+AVNPS+S  NPAEKY+QVIS+DNHEFWFMGFLNY+GAV  LQ +L+A  L SV
Sbjct:  135 KTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSYKNGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSLQAGALRSV 299          
BLAST of CX671939 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 6.458e-64
Identity = 113/159 (71.07%), Postives = 138/159 (86.79%), Query Frame = -3
Query:  334 KAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGALEA 810
            KAEDLAGN WQHLKT PS ADAA+ RIAQGTK+LAEGGYEK+F+QTF+ +P+E+L  +YACYLSTSAGPV+G++Y+ST KLAF SDNPLSYK   QT WSYYKVV+P +QL+AVNPS+SR N ++KY+QVISIDNHEFWFMGF+ Y  AV+ LQ A+++
Sbjct:   98 KAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYKEGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAVQS 256          
BLAST of CX671939 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.304e-56
Identity = 115/159 (72.33%), Postives = 124/159 (77.99%), Query Frame = -3
Query:  334 KAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGALEA 810
            KAE LAGNTWQH         AAMGRIAQ TKVLAEGGYEKIFRQTFETVPEEQLQNS+ACYLSTSAGPVMG+LYVSTAKLA+CSD  L              VVIPLHQL++VNPS S  NPAEKY+QVIS+D+HEFWFMGFLNY GAV  LQ  L+A
Sbjct:   94 KAESLAGNTWQHPLR------AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL--------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFWFMGFLNYEGAVTSLQDTLQA 232          
BLAST of CX671939 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.948e-42
Identity = 76/154 (49.35%), Postives = 106/154 (68.83%), Query Frame = -3
Query:  352 KAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS-SGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWL 810
            KAE +A N W +LKT PS ++ A G++    K + +GG+E +FRQ F T P E L+ ++ACYLST+ GPV G +Y+S A++AFCSD PL + + SGQ  WSYY+VV+PL  +  VNP   +  P EKY+Q+ ++D H+FWFMGF+NY  A   L
Sbjct:  103 KAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHL 256          
BLAST of CX671939 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.393e-34
Identity = 70/159 (44.03%), Postives = 108/159 (67.92%), Query Frame = -3
Query:  340 KAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSS--GQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGAL 810
            KAE L G    HLK SPS +DAAM R++QGTK++ EGG E++F++ F  +  E+L +S+ CY+ST++GPV G++Y+S  ++AFCSD  +   SS  G    +YYKVV+   ++ +++ S++   P+E+YV +++ D  EFWFMGF++Y  A   L  AL
Sbjct:   66 KAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWFMGFVSYIDAFNCLNKAL 224          
BLAST of CX671939 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.318e-29
Identity = 58/145 (40.00%), Postives = 94/145 (64.83%), Query Frame = -3
Query:  340 KTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS-SGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGAL 771
            K  P   +    +++ G ++L  GG EKI+++ F+   EE+L  +Y CYLST+AGP+ G+L++S+ K+AFCS+  +   S  G+    +YKV IPL ++  VN S +   P++KY++V+++D  +FWFMGFL+Y  A   L+ AL
Sbjct:   69 KLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQAL 213          
BLAST of CX671939 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.318e-29
Identity = 58/145 (40.00%), Postives = 94/145 (64.83%), Query Frame = -3
Query:  340 KTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS-SGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGAL 771
            K  P   +    +++ G K+L  GG EKI+++ F+   +E+L  +Y CYLST+AGP+ G+L++S+ K+AFCS+  +   S  G     +YKV IPL ++  VN S +   P++KY+++++IDN +FWFMGF++Y  A   L+ AL
Sbjct:   69 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQNTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAFNCLEKAL 213          
BLAST of CX671939 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.457e-28
Identity = 55/145 (37.93%), Postives = 93/145 (64.14%), Query Frame = -3
Query:  340 KTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS-SGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGAL 771
            K  P   +    +++ G K+L  GG EKI+++ F+   +E+L  +Y CYLST+ G + G+L++S+ K+AFCS+  +   S  G     +YKV IPL ++  VN S +   P+++Y++V+++DN++FWFMGF++Y  A   L+ AL
Sbjct:   61 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKAL 205          
BLAST of CX671939 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.272e-27
Identity = 59/158 (37.34%), Postives = 92/158 (58.23%), Query Frame = -3
Query:  340 KAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS-SGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGAL 810
            K +          K  P   +    +++ G ++L  GG EKIF++ F     E+L   Y CYLST+AGP+ G+L++S+ K+AFCS+  +   S  G     +YKV IPL ++  VN S +   P++KY++V+++D  +FWFMGFL+Y  A   L+ AL
Sbjct:   55 KTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKAL 212          
The following BLAST results are available for this feature:
BLAST of CX671939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEM_ARATH6.226e-7581.21GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML1_ARATH6.458e-6471.07GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEML3_ARATH1.304e-5672.33Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML5_ARATH6.948e-4249.35GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEML2_ARATH2.393e-3444.03GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
GEML8_ARATH2.318e-2940.00Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML6_ARATH2.318e-2940.00GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML7_ARATH7.457e-2837.93GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
GEML4_ARATH1.272e-2737.34GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14A07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14A07-A14-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671939 ID=CX671939; Name=CX671939; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTCATATTCCAAATGTTGTTAACCATTTAATAAATAAAAAATAAAT
ACATAATGAGAAAGCAATGTTAAACTAGCTCATTTTGAAACAGATTGGAT
ACAATATAAAGCTTCCTGACAAGCTGTAACATGCAAAATAATCACATGGA
CTAAAAAAAAGTCAACATATTTTTCTACTATATCCCTGATACAATATAAT
CTCTATTGTTTACCTAATTTTAGTTCCCACAGAGGAGACACATGCATTAT
GAAAATTTCACGGTTCCATGGGGAACATCAGACAATAGAGTGAAACCGCA
AGCCAAATCAAGTCACACAGATTCTAGGTTGCGAGCCTCCAAAGCTCCCT
GTAGCCATTCCACAGCACCGTTGTAGTTTAAGAAGCCCATGAACCAAAAC
TCATGATTATCTATGGAGATAACCTGAACATATTTTTCAGCGGGATTGTT
TCTGCTTGATGAAGGATTAACTGCTCTAAGCTGATGCAATGGGATAACTA
CCTTATAATAGCTCCATTCAGTTTGGCCACTGGATTTATAGGAAAGCGGG
TTGTCGCTACAAAATGCCAGCTTCGCAGTAGATACATATAAGATTCCCAT
GACTGGACCAGCTGATGTGGATAAGTAACAAGCATATGAGTTCTGAAGTT
GCTCCTCAGGAACTGTCTCAAAAGTTTGCCGAAAGATCTTTTCATAACCG
CCTTCTGCCAGAACCTTAGTTCCCTGTGCAATCCTTCCCATAGCAGCATC
AGCAAAGCTCGGGCTTGTTTTCAGATGCTGCCAGGTGTTCCCAGCGAGAT
CCTCTGCTTTCT
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