CX671938

Overview
NameCX671938
Unique NameCX671938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5118 contig Csv1_Contig5118:1..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671938 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 1.083e-60
Identity = 115/166 (69.28%), Postives = 135/166 (81.33%), Query Frame = 3
Query:  438 HWSPDLVTESHAPNTHNYQNTMPPIDGSNPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTE 935
            HWSP+LV+ S  P+     ++     GSNPY+A +PA  S++ S KD + +VK VLGRWGK+V EA KK E LAGNTWQHL+T+PSFADAAMGRIAQ TKV AEGGYEKIFRQTFET PEEQL NS+ACYLSTSAGPVMG+LY+S+AKLA+CSDNPLSYK+  QTE
Sbjct:   71 HWSPELVSGSQEPDQKAASSSSA---GSNPYIARSPAETSDA-SLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSYKNGDQTE 232          
BLAST of CX671938 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.733e-50
Identity = 105/157 (66.88%), Postives = 120/157 (76.43%), Query Frame = 3
Query:  438 HWSPDLVTESHAPNTHNYQNTMPPIDGSNPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPL 908
            HW+P+LV+ES AP+     ++      SNPYVA  P   S++ S K+ + SVK VLGRWG++VGEA  KAE LAGNTWQH         AAMGRIAQ TKVLAEGGYEKIFRQTFETVPEEQLQNS+ACYLSTSAGPVMG+LYVSTAKLA+CSD  L
Sbjct:   29 HWNPELVSESPAPDEKALSSSSAA--RSNPYVARAPTETSDA-SLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR------AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL 176          
BLAST of CX671938 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 7.282e-49
Identity = 95/145 (65.52%), Postives = 115/145 (79.31%), Query Frame = 3
Query:  498 TMPPIDGSNPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQT 932
            TMP    SNPYV+ +PAP       ++ + SVKD LG+WGK   +ATKKAEDLAGN WQHLKT PS ADAA+ RIAQGTK+LAEGGYEK+F+QTF+ +P+E+L  +YACYLSTSAGPV+G++Y+ST KLAF SDNPLSYK   QT
Sbjct:   59 TMPA--ESNPYVSPSPAP-------RNTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYKEGEQT 194          
BLAST of CX671938 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.409e-29
Identity = 69/155 (44.52%), Postives = 98/155 (63.23%), Query Frame = 3
Query:  459 TESHAPNTHNYQNTMPPIDGSNPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSS 923
            T  H  N+H  +         NPYV H  +P   S S K +   V +VL R GKKV +AT+KAE L G    HLK SPS +DAAM R++QGTK++ EGG E++F++ F  +  E+L +S+ CY+ST++GPV G++Y+S  ++AFCSD  +   SS
Sbjct:   15 TAKHKTNSHGGRY-------DNPYV-HITSP--TSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSS 159          
BLAST of CX671938 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.108e-24
Identity = 70/220 (31.82%), Postives = 108/220 (49.09%), Query Frame = 3
Query:  297 IVVGSESEKVSENENQAQPQNQIKIQLXXXXXXXXXXXXXXXXXXXXHWSPDLVTESHAPNTH-NYQNTMPPIDGSN------PYVAHTPAP-PSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS-SGQ 929
            I++  E  K  E E+Q +P +    Q                      W   ++    AP  H + Q     + G N      PYV ++P   P+ +   +  +G    +   W       ++KAE +A N W +LKT PS ++ A G++    K + +GG+E +FRQ F T P E L+ ++ACYLST+ GPV G +Y+S A++AFCSD PL + + SGQ
Sbjct:   11 IIIDQEQPKTLETEHQPEPSSSSPDQ--------------------KKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVEHPTTNNPLEPVIG----MFHTW-------SRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQ 199          
BLAST of CX671938 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.459e-14
Identity = 41/124 (33.06%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  549 PPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS 920
            P S+ FSF    G  K +L +         KK +          K  P   +    +++ G ++L  GG EKI+++ F+   EE+L  +Y CYLST+AGP+ G+L++S+ K+AFCS+  +   S
Sbjct:   36 PTSSKFSF--LTGKGKSMLRK---------KKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVAS 148          
BLAST of CX671938 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 9.934e-14
Identity = 33/94 (35.11%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  639 KKAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS 920
            KK +          K  P   +    +++ G K+L  GG EKI+++ F+   +E+L  +Y CYLST+AGP+ G+L++S+ K+AFCS+  +   S
Sbjct:   55 KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVAS 148          
BLAST of CX671938 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.297e-13
Identity = 45/136 (33.09%), Postives = 67/136 (49.26%), Query Frame = 3
Query:  531 VAHTPAPPS-NSF-----SFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS 920
            V + P P S N F     S K    +VK +L R         KK +          K  P   +    +++ G ++L  GG EKIF++ F     E+L   Y CYLST+AGP+ G+L++S+ K+AFCS+  +   S
Sbjct:   21 VGYLPDPASFNKFRVPASSKKSEQSNVKSILKR---------KKTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDS 147          
BLAST of CX671938 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.174e-12
Identity = 31/94 (32.98%), Postives = 53/94 (56.38%), Query Frame = 3
Query:  639 KKAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS 920
            KK +          K  P   +    +++ G K+L  GG EKI+++ F+   +E+L  +Y CYLST+ G + G+L++S+ K+AFCS+  +   S
Sbjct:   47 KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTS 140          
The following BLAST results are available for this feature:
BLAST of CX671938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEM_ARATH1.083e-6069.28GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML3_ARATH1.733e-5066.88Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML1_ARATH7.282e-4965.52GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEML2_ARATH6.409e-2944.52GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
GEML5_ARATH8.108e-2431.82GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEML8_ARATH4.459e-1433.06Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML6_ARATH9.934e-1435.11GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML4_ARATH1.297e-1333.09GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
GEML7_ARATH4.174e-1232.98GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14A07_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14A07-A14-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671938 ID=CX671938; Name=CX671938; organism=Citrus sinensis; type=EST; length=935bp
CGAATTCTCAATCCCGCTTGGCGCTAAAAAAAGTCATCAATTTGTACGGT
CATGCCCTCTAAATCCTCTCTCCCCTGTAGCGATCCGAACAGAGAACTCA
TAACATTTGAATATCAAACCATTCCCAATCAAGACTCGCCACGCGCCTCC
GAAGAACCTTCTGAAACAAAATGGATCAGCAACAAGCGCCCCCGAAGGCC
GCAGCAGCAGACCCCGACCACAACAAGACAGAGTCCCCCGCTCCGAACCC
GAAACCCGATCCCAATCCCAATGGGGACGGCGATAACTGGGCGAATATCG
TCGTGGGATCCGAGTCTGAGAAAGTTTCTGAGAATGAGAATCAAGCGCAG
CCTCAGAATCAGATCAAGATCCAATTAGAAAGCTCCACGAATTCATCCGA
ACCGTCGCCAGCATCATCCGTGTCGAAGAAATCGGTGCACTGGAGCCCCG
ACTTGGTGACCGAATCGCACGCTCCCAATACTCATAATTACCAAAATACC
ATGCCCCCAATCGACGGATCCAATCCTTACGTCGCCCACACTCCTGCACC
GCCCTCCAATTCATTTTCCTTCAAAGACGCGGTAGGGAGTGTGAAGGATG
TGTTGGGGCGATGGGGGAAGAAAGTTGGAGAAGCGACGAAGAAAGCAGAG
GATCTCGCTGGGAACACCTGGCAGCATCTGAAAACAAGCCCGAGCTTTGC
TGATGCTGCTATGGGAAGGATTGCACAGGGAACTAAGGTTCTGGCAGAAG
GCGGTTATGAAAAGATCTTTCGGCAAACTTTTGAGACAGTTCCTGAGGAG
CAACTTCAGAACTCATATGCTTGTTACTTATCCACATCAGCTGGTCCAGT
CATGGGAATCTTATATGTATCTACTGCGAAGCTGGCATTTTGTAGCGACA
ACCCGCTTTCCTATAAATCCAGTGGCCAAACTGAA
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