CX671927

Overview
NameCX671927
Unique NameCX671927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5115 contig Csv1_Contig5115:1..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671927 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.338e-23
Identity = 61/104 (58.65%), Postives = 74/104 (71.15%), Query Frame = -2
Query:   76 PNSESCRAETRSFLRGIDVNRLPSHAD-NEEEXXXXXXXXXXXXXSGKRSEREPNGDELEMERACSRGISDEEDGDTSRKKLRLSKDQSAILEESFKEHNTLNP 384
            PNS+S + ETR+F+RGIDVNR PS A+  +E+             +GKRSERE + D        SRGISD+EDGD SRKKLRLSKDQSAILEE+FK+H+TLNP
Sbjct:   55 PNSDSSQKETRTFIRGIDVNRPPSTAEYGDEDAGVSSPNSTVSSSTGKRSEREEDTDPQG-----SRGISDDEDGDNSRKKLRLSKDQSAILEETFKDHSTLNP 153          
BLAST of CX671927 vs. ExPASy Swiss-Prot
Match: HAT2_ARATH (Homeobox-leucine zipper protein HAT2 OS=Arabidopsis thaliana GN=HAT2 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.616e-16
Identity = 55/105 (52.38%), Postives = 63/105 (60.00%), Query Frame = -2
Query:   76 SFLRGIDVNRLPSHADNEEEXXXXXXXXXXXXXS-GKRSERE----------PNGDELEMERACSRGISDEED--GDTSRKKLRLSKDQSAILEESFKEHNTLNP 351
            S LR IDVN  PS  + EE+               GKRSERE           + DE+  +R  SRG SDEE+  G+TSRKKLRLSKDQSA LEE+FKEHNTLNP
Sbjct:   50 SDLRKIDVNSFPSTVNCEEDTGVSSPNSTISSTISGKRSEREGISGTGVGSGDDHDEITPDRGYSRGTSDEEEDGGETSRKKLRLSKDQSAFLEETFKEHNTLNP 154          
BLAST of CX671927 vs. ExPASy Swiss-Prot
Match: HAT1_ARATH (Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana GN=HAT1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.616e-16
Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = -2
Query:   76 ETRSFLRGIDVNRLPSHADNEEEXXXXXXXXXXXXXS-GKR--SEREPN-----GDELE--MERACSRGISDEED---GDTSRKKLRLSKDQSAILEESFKEHNTLNP 360
            + + FLR IDVN LP+  D EEE               GKR  +ERE       GD+L+  ++R+ SRG SDEE+   G+T RKKLRLSKDQSA+LE++FKEHNTLNP
Sbjct:   52 QKQQFLRKIDVNSLPTTVDLEEETGVSSPNSTISSTVSGKRRSTEREGTSGGGCGDDLDITLDRSSSRGTSDEEEDYGGETCRKKLRLSKDQSAVLEDTFKEHNTLNP 159          
BLAST of CX671927 vs. ExPASy Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.420e-14
Identity = 56/122 (45.90%), Postives = 71/122 (58.20%), Query Frame = -2
Query:   76 SESCRAETRSFLRGIDVNRLPS----HADNEEEXXXXXXXXXXXXXSGKRSEREPNG----------DELEMERA-CSRGI-SDEEDG-----DTSRKKLRLSKDQSAILEESFKEHNTLNP 378
            S    ++ RSFLRGIDVNR PS      ++E               SGK+SERE             ++ E+ERA CS G  SD+EDG     D+SRKKLRLSK+Q+ +LEE+FKEH+TLNP
Sbjct:   65 SSERNSDMRSFLRGIDVNRAPSTVVVDVEDEGAGVSSPNSTVSSVMSGKKSERELMAAAGAVGGGRVEDNEIERASCSLGGGSDDEDGSGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNP 186          
BLAST of CX671927 vs. ExPASy Swiss-Prot
Match: ATHB4_ARATH (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana GN=ATHB-4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.057e-12
Identity = 52/110 (47.27%), Postives = 62/110 (56.36%), Query Frame = -2
Query:   76 AETRSFLRGIDVNRLPSHAD----NEEEXXXXXXXXXXXXXSGKRSEREP--NGDELEMERA-CSRGI----SDEEDG---DTSRKKLRLSKDQSAILEESFKEHNTLNP 363
            ++  SFLRG +VNR  S        EE              SG + +      GDE E ERA CSRG     SD+EDG   D SRKKLRLSKDQ+ +LEE+FKEH+TLNP
Sbjct:   78 SDAGSFLRGFNVNRAQSSVAVVDLEEEAAVVSSPNSAVSSLSGNKRDLAVARGGDENEAERASCSRGGGSGGSDDEDGGNGDGSRKKLRLSKDQALVLEETFKEHSTLNP 187          
BLAST of CX671927 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSJ (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. japonica GN=HOX1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 45/103 (43.69%), Postives = 54/103 (52.43%), Query Frame = -2
Query:   76 FLRGIDVNRLP------------SHADNEEEXXXXXXXXXXXXXSGKRSEREPNGDELEMERACSRGISDEEDGDTSRKKLRLSKDQSAILEESFKEHNTLNP 348
            FLRGIDVNR P            S ++ +EE             SGKR      G       A +    DE+ G  SRKKLRLSKDQ+A+LE++FKEHNTLNP
Sbjct:   85 FLRGIDVNRAPAAETTTTTARGPSCSEEDEEPGASSPNSTLSSLSGKR------GAPSAATAAAAAASDDEDSGGGSRKKLRLSKDQAAVLEDTFKEHNTLNP 181          
BLAST of CX671927 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSI (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. indica GN=HOX1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 45/103 (43.69%), Postives = 54/103 (52.43%), Query Frame = -2
Query:   76 FLRGIDVNRLP------------SHADNEEEXXXXXXXXXXXXXSGKRSEREPNGDELEMERACSRGISDEEDGDTSRKKLRLSKDQSAILEESFKEHNTLNP 348
            FLRGIDVNR P            S ++ +EE             SGKR      G       A +    DE+ G  SRKKLRLSKDQ+A+LE++FKEHNTLNP
Sbjct:   85 FLRGIDVNRAPAAETTTTTARGPSCSEEDEEPGASSPNSTLSSLSGKR------GAPSAATAAAAAASDDEDSGGGSRKKLRLSKDQAAVLEDTFKEHNTLNP 181          
The following BLAST results are available for this feature:
BLAST of CX671927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
HAT4_ARATH2.338e-2358.65Homeobox-leucine zipper protein HAT4 OS=Arabidopsi... [more]
HAT2_ARATH3.616e-1652.38Homeobox-leucine zipper protein HAT2 OS=Arabidopsi... [more]
HAT1_ARATH3.616e-1650.93Homeobox-leucine zipper protein HAT1 OS=Arabidopsi... [more]
HAT3_ARATH4.420e-1445.90Homeobox-leucine zipper protein HAT3 OS=Arabidopsi... [more]
ATHB4_ARATH7.057e-1247.27Homeobox-leucine zipper protein ATHB-4 OS=Arabidop... [more]
HOX1_ORYSJ2.053e-1143.69Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HOX1_ORYSI2.053e-1143.69Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14A01_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14A01-A2-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671927 ID=CX671927; Name=CX671927; organism=Citrus sinensis; type=EST; length=784bp
TTTTTTTTTTTTTTTTTCCAATTTTACTTCATTTTCTCGGAGAACTAACA
GAAGCCTGAGAAGAAAAATACTTACTGGGTTGAGAGTGTTGTGCTCTTTG
AAGCTCTCTTCAAGAATGGCTGACTGATCTTTAGAAAGTCTCAGCTTCTT
TCTTGAAGTGTCACCATCCTCTTCGTCGCTGATACCACGAGAGCAAGCTC
TCTCCATTTCGAGCTCATCTCCATTAGGTTCCCGCTCGCTTCTCTTGCCG
CTAACGCTCGAAATCGTGCTGTTAGGAGATGAGACGCCCACTTCTTCTTC
GTTATCTGCATGTGATGGCAATCGATTCACGTCGATTCCTCTAAGAAATG
ATCGGGTCTCGGCGCGACAAGACTCAGAGTTTGGATCTGCATGTCCGATC
AAGAATTAGATATAGTGTCATGAAATTATTTTCTGAAACTTGGATCTGGA
AGGAAGAAACAAGTTTGAGGATCTTCTGAGAGTGAATAAGAGAAAAGTAT
CATGGAGTGGAAAACGATTAAAAGAAAAAAAAAAAAAAAGATACATGCAA
TTTATGAAAAGCAGGAAAGTACAATTTTTTTTTTTTAATCAATGAAAAAG
GAAAAAGACCTGATAAAAAATGAATTTTTTTTCTTTTTTGATAAAAACAT
GCATGTTTCACCAGATCTGAGACTTTTAACCCATGAAAATTGCAGGAATC
GAGACAAAACGCACCTGAAGATGGGAATAAGGCCTCGTTCCAAGGGGTTT
TTTGGAGACTGAAACCAGAAGGAGAAGTGGAACA
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