CX671925

Overview
NameCX671925
Unique NameCX671925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1611 contig Csv1_Contig1611:470..1288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671925 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 4.173e-59
Identity = 116/179 (64.80%), Postives = 132/179 (73.74%), Query Frame = -3 
Query:  219 LGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNA-KQPKDLSA-NHNXXXXXXXXXSRPAESQTKAVKMSP-PPKXXXXXXXXXXXXXEQGAT-CGACGDNYGTDEFWICCDICEKWFHGKCVKITPAKAEHIKQYKCPSCSSKRAR 743
            LGINFARDGM EKDWLSLVAVHSD+WLLAVAF+FGARFGF K +RK+LF M+NDLPTIFEVV G A KQ KD S+ ++N          R +ES+ K  K  P   +             EQG T CGACG++Y  DEFWICCD+CE WFHGKCVKITPA+AEHIKQYKCPSCS+KRAR
Sbjct:   76 LGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 254

HSP 2 Score: 22.3274 bits (46), Expect = 4.173e-59
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = -2 
Query:  790 YGLPNETWEV 819
            YG PNE WEV
Sbjct:   51 YGHPNEHWEV 60
The following BLAST results are available for this feature:
BLAST of CX671925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH4.173e-5964.80PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_13H12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13H12-O23-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671925 ID=CX671925; Name=CX671925; organism=Citrus sinensis; type=EST; length=820bp
TTTTTTTTTTTTTTTTTGCTCCAACATTTGCATTTCTAAATGCCAGCAGC
TATTTCAAAACACAAATTCCAGAGAAAATTAAACAGGAGTTGCAAATTCA
TTGACTAAAACAGGTATCTGACTCTGTTTTACTCTCAAACTGTAACGAAA
AAAGTTCTAATCTTGTCTTGCTTTGTTCAATCGTTGTTCAATTCCCAACT
TCATAACTGATCTTAAACTCTAGCCCTCTTGCTACTGCAGCTGGGGCACT
TGTACTGCTTGATGTGCTCGGCCTTCGCAGGTGTAATCTTTACACATTTG
CCGTGGAACCATTTCTCACAGATATCGCAGCAGATCCAGAATTCGTCAGT
GCCATAGTTATCCCCGCATGCTCCACAGGTGGCACCCTGTTCATCATCTT
CCTCTTCTTCATCACCGCTATCATCATCGTCCTTCGGTGGTGGAGACATC
TTCACTGCTTTGGTTTGTGATTCAGCTGGACGAGACTTTCCACTCGATTT
GCTTTTGCTGCTATTGTGATTAGCAGATAGGTCCTTTGGTTGCTTAGCAT
TTCCAGTTACAACTTCAAAGATGGTTGGGAGATCATTTATCATCTGGAAA
AGTTTCTTCCTTTCATTTTTGCCAAATCCAAAGCGTGCACCAAAATAAAA
AGCTACAGCAAGCAACCATGAATCACTGTGCACTGCAACCAGTGATAACC
AGTCCTTCTCCTGCATTCCATCTCTAGCAAAGTTTATACCTAATGCTGGC
TCAGGGAGCTCGGGAGGCACCTCCTCAACAGGCAGATTAAACTTCCCATG
TCTCATTAGGAAGCCCGTAT
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