CX671921

Overview
NameCX671921
Unique NameCX671921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:251..1068. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671921 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.975e-28
Identity = 66/121 (54.55%), Postives = 80/121 (66.12%), Query Frame = -1 
Query:  421 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLVVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXARKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 783
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                   ARKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CX671921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.975e-2854.55Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_13H10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13H10-O19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671921 ID=CX671921; Name=CX671921; organism=Citrus sinensis; type=EST; length=813bp
TTTTTTTTTTTTTTTTTCAGAGAAGCAACTTATTTATTAATAATAAAACA
TATATGCTCATCACGACCGTCCACGAAGGGATGATCTTGGCTCTTACAAA
ATGACAATCAAAAACATGTCCTAAACCCAAAAACCAGTAACCTTTCATCT
CCGCCCACAGCTTAGGCAATCCTCACGTCACATACAATTATATGATATAA
AACATCACACAGTCTTTGGTTTACTTTTTAGTCAGCAGCATTTAAAACCA
AACTTTAGATAGGAAGGACACGTAATACAAATAGCATTAACAAAACGACA
AGGACACGTTGCGAAATCCAAAACGAAACGACACTATCTACAGACTACAG
GCAACTCATCCGGTGAGTTGGTGACCCATCACATTCATTTACATCGCTGG
AGCGTATCATCCACTCAGTGATGATGCTTGCTCCTAGTCTCCCCACTGTA
AAGCCAGTCATAAACAGTGGGAGAGTTAGGATGTGTGGGCTTGTCAAAGA
CCTCTGCACCGATACCCCTAGTAGCAAGGTTGCTACCGGGGTGAAACACG
CTCCTCCACACGTTGTCCTTACGCGCCGACAGCGGAGTCGTCGGCGTCAC
TGGCGTCGACGGTGCCCCTGGACTCGCTGGCATTGACAGAGACCTCTGGA
ACTTGCCCGACGACGACTCCGCCTCACCACCCTCTTTGACTACTAAGGGT
GTTGTGGTGATTTTCCTCAGCCTGCCAAGGCCACGATCAGGCTGAGGCCC
TGCCACAACATCGTCCCAAAGCTTCTCTAGCATCTTTAAATTTAAAATTT
AGCTGCTAGTTTC
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