CX671920
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671920 vs. ExPASy Swiss-Prot
Match: SDF2_ARATH (Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana GN=At2g25110 PE=2 SV=1) HSP 1 Score: 256.914 bits (655), Expect = 8.046e-68 Identity = 112/145 (77.24%), Postives = 130/145 (89.66%), Query Frame = -3 Query: 295 GFPDVDDANSYWIFKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTES 729 GFP V D+NSYWI KP+ G + KQGD +KSG IRLQHM+TRKWLHSHLHASPISGNLE+SCFG + SDTGD+W+++IEGSGKTW+QDQR+RLQH+DT GYLHSH KKYQRIAGGQQEVCG+REK+ADN+WLAAEGVYLP+ ES Sbjct: 72 GFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLIIEGSGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNIWLAAEGVYLPLNES 216
BLAST of CX671920 vs. ExPASy Swiss-Prot
Match: SDF2_DICDI (Stromal cell-derived factor 2-like protein OS=Dictyostelium discoideum GN=DDB_G0284847 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28 Identity = 65/140 (46.43%), Postives = 80/140 (57.14%), Query Frame = -3 Query: 313 GFPDVDDANSYWIFKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHS-HPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVY 729 GFP+ DD NS W+ K G QG +K+G IIRL H T+K LHSHL SP++ E+SCFG E DTGD W V E SGK W + Q +R +H DT YL + KYQ GQ E+ G + K D W EG+Y Sbjct: 70 GFPENDDTNSLWVIKGPHGNRVLQGTVVKNGDIIRLVHSNTKKNLHSHLAVSPLTKQNEVSCFGENGEGDTGDNWIVETE-SGKEWMRGQVVRFKHADTKTYLQAIESAKYQNPIPGQIEISGGKSKNEDTKWRTEEGIY 208
BLAST of CX671920 vs. ExPASy Swiss-Prot
Match: SDF2_MOUSE (Stromal cell-derived factor 2 OS=Mus musculus GN=Sdf2 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.111e-22 Identity = 56/144 (38.89%), Postives = 79/144 (54.86%), Query Frame = -3 Query: 298 GFPDVDDANSYWIFKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTE 729 G VDD+NSYW + ++G IK G IRL H+ T + LHSH SP+SGN E+S FG E E D D W V+ +G W +D +R +H T L ++Y R GQ+EV G+ + +N W A EG+++ +E Sbjct: 59 GVTSVDDSNSYWRIRGKTATVCERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC--NGPYWVRDGEVRFKHSSTDVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSE 200
BLAST of CX671920 vs. ExPASy Swiss-Prot
Match: SDF2_HUMAN (Stromal cell-derived factor 2 OS=Homo sapiens GN=SDF2 PE=1 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 8.717e-22 Identity = 56/144 (38.89%), Postives = 79/144 (54.86%), Query Frame = -3 Query: 298 GFPDVDDANSYWIFKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTE 729 G VDD+NSYW + ++G IK G IRL H+ T + LHSH SP+SGN E+S FG E E D D W V+ +G W +D +R +H T L ++Y R GQ+EV G+ + +N W A EG+++ +E Sbjct: 59 GVTSVDDSNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC--NGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSE 200
BLAST of CX671920 vs. ExPASy Swiss-Prot
Match: SDF2_BOVIN (Stromal cell-derived factor 2 OS=Bos taurus GN=SDF2 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.487e-21 Identity = 55/144 (38.19%), Postives = 79/144 (54.86%), Query Frame = -3 Query: 298 GFPDVDDANSYWIFKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTE 729 G VDD+NSYW + ++G I+ G IRL H+ T + LHSH SP+SGN E+S FG E E D D W V+ +G W +D +R +H T L ++Y R GQ+EV G+ + +N W A EG+++ +E Sbjct: 59 GVTSVDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC--NGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSE 200
BLAST of CX671920 vs. ExPASy Swiss-Prot
Match: SDF2L_MOUSE (Stromal cell-derived factor 2-like protein 1 OS=Mus musculus GN=Sdf2l1 PE=2 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 2.147e-20 Identity = 52/140 (37.14%), Postives = 74/140 (52.86%), Query Frame = -3 Query: 310 GFPDVDDANSYWIFKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYL 729 G + DDANSYW + +G ++ G +RL H+ T K LH+H SP+S N E+S FG + E D D W V SG+ W ++ +R QHV T +L ++Y GQ EV G+ A N W A EG+++ Sbjct: 71 GVEESDDANSYWRIRGGSEGGCPRGLPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRC--SGQHWEREASVRFQHVGTSVFLSVTGEQYGNPIRGQHEVHGMPSANAHNTWKAMEGIFI 208
BLAST of CX671920 vs. ExPASy Swiss-Prot
Match: SDF2L_HUMAN (Stromal cell-derived factor 2-like protein 1 OS=Homo sapiens GN=SDF2L1 PE=1 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 8.159e-20 Identity = 50/135 (37.04%), Postives = 71/135 (52.59%), Query Frame = -3 Query: 310 DDANSYWIFKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYL 714 DDANSYW + +G ++ G +RL H+ T K LH+H SP+S N E+S FG + E D D W V SG+ W ++ +R QHV T +L ++Y GQ EV G+ N W A EG+++ Sbjct: 76 DDANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRC--SGQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMPSANTHNTWKAMEGIFI 208
BLAST of CX671920 vs. ExPASy Swiss-Prot
Match: SDF2L_BOVIN (Stromal cell-derived factor 2-like protein 1 OS=Bos taurus GN=SDF2L1 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 8.159e-20 Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = -3 Query: 310 DDANSYWIFKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYL 714 DDANSYW + +G ++ G +RL H+ T K LH+H SP++ N E+S FG + E D D W V SG+ W ++ +R QHV T +L ++Y GQ EV G+ A N W A EG+++ Sbjct: 76 DDANSYWRIRGGTEGECPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLTNNQEVSAFGEDGEGDDLDLWTVRC--SGQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMASASAHNKWKAMEGIFI 208 The following BLAST results are available for this feature:
BLAST of CX671920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX671920 ID=CX671920; Name=CX671920; organism=Citrus sinensis; type=EST; length=731bpback to top |