CX671920

Overview
NameCX671920
Unique NameCX671920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671920 vs. ExPASy Swiss-Prot
Match: SDF2_ARATH (Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana GN=At2g25110 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 8.046e-68
Identity = 112/145 (77.24%), Postives = 130/145 (89.66%), Query Frame = -3
Query:  295 GFPDVDDANSYWIFKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTES 729
            GFP V D+NSYWI KP+ G + KQGD +KSG  IRLQHM+TRKWLHSHLHASPISGNLE+SCFG +  SDTGD+W+++IEGSGKTW+QDQR+RLQH+DT GYLHSH KKYQRIAGGQQEVCG+REK+ADN+WLAAEGVYLP+ ES
Sbjct:   72 GFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLIIEGSGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNIWLAAEGVYLPLNES 216          
BLAST of CX671920 vs. ExPASy Swiss-Prot
Match: SDF2_DICDI (Stromal cell-derived factor 2-like protein OS=Dictyostelium discoideum GN=DDB_G0284847 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 65/140 (46.43%), Postives = 80/140 (57.14%), Query Frame = -3
Query:  313 GFPDVDDANSYWIFKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHS-HPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVY 729
            GFP+ DD NS W+ K   G    QG  +K+G IIRL H  T+K LHSHL  SP++   E+SCFG   E DTGD W V  E SGK W + Q +R +H DT  YL +    KYQ    GQ E+ G + K  D  W   EG+Y
Sbjct:   70 GFPENDDTNSLWVIKGPHGNRVLQGTVVKNGDIIRLVHSNTKKNLHSHLAVSPLTKQNEVSCFGENGEGDTGDNWIVETE-SGKEWMRGQVVRFKHADTKTYLQAIESAKYQNPIPGQIEISGGKSKNEDTKWRTEEGIY 208          
BLAST of CX671920 vs. ExPASy Swiss-Prot
Match: SDF2_MOUSE (Stromal cell-derived factor 2 OS=Mus musculus GN=Sdf2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.111e-22
Identity = 56/144 (38.89%), Postives = 79/144 (54.86%), Query Frame = -3
Query:  298 GFPDVDDANSYWIFKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTE 729
            G   VDD+NSYW  +       ++G  IK G  IRL H+ T + LHSH   SP+SGN E+S FG E E D  D W V+   +G  W +D  +R +H  T   L    ++Y R   GQ+EV G+ +   +N W A EG+++  +E
Sbjct:   59 GVTSVDDSNSYWRIRGKTATVCERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC--NGPYWVRDGEVRFKHSSTDVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSE 200          
BLAST of CX671920 vs. ExPASy Swiss-Prot
Match: SDF2_HUMAN (Stromal cell-derived factor 2 OS=Homo sapiens GN=SDF2 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.717e-22
Identity = 56/144 (38.89%), Postives = 79/144 (54.86%), Query Frame = -3
Query:  298 GFPDVDDANSYWIFKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTE 729
            G   VDD+NSYW  +       ++G  IK G  IRL H+ T + LHSH   SP+SGN E+S FG E E D  D W V+   +G  W +D  +R +H  T   L    ++Y R   GQ+EV G+ +   +N W A EG+++  +E
Sbjct:   59 GVTSVDDSNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC--NGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSE 200          
BLAST of CX671920 vs. ExPASy Swiss-Prot
Match: SDF2_BOVIN (Stromal cell-derived factor 2 OS=Bos taurus GN=SDF2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.487e-21
Identity = 55/144 (38.19%), Postives = 79/144 (54.86%), Query Frame = -3
Query:  298 GFPDVDDANSYWIFKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTE 729
            G   VDD+NSYW  +       ++G  I+ G  IRL H+ T + LHSH   SP+SGN E+S FG E E D  D W V+   +G  W +D  +R +H  T   L    ++Y R   GQ+EV G+ +   +N W A EG+++  +E
Sbjct:   59 GVTSVDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC--NGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSE 200          
BLAST of CX671920 vs. ExPASy Swiss-Prot
Match: SDF2L_MOUSE (Stromal cell-derived factor 2-like protein 1 OS=Mus musculus GN=Sdf2l1 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.147e-20
Identity = 52/140 (37.14%), Postives = 74/140 (52.86%), Query Frame = -3
Query:  310 GFPDVDDANSYWIFKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYL 729
            G  + DDANSYW  +        +G  ++ G  +RL H+ T K LH+H   SP+S N E+S FG + E D  D W V    SG+ W ++  +R QHV T  +L    ++Y     GQ EV G+    A N W A EG+++
Sbjct:   71 GVEESDDANSYWRIRGGSEGGCPRGLPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRC--SGQHWEREASVRFQHVGTSVFLSVTGEQYGNPIRGQHEVHGMPSANAHNTWKAMEGIFI 208          
BLAST of CX671920 vs. ExPASy Swiss-Prot
Match: SDF2L_HUMAN (Stromal cell-derived factor 2-like protein 1 OS=Homo sapiens GN=SDF2L1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.159e-20
Identity = 50/135 (37.04%), Postives = 71/135 (52.59%), Query Frame = -3
Query:  310 DDANSYWIFKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYL 714
            DDANSYW  +        +G  ++ G  +RL H+ T K LH+H   SP+S N E+S FG + E D  D W V    SG+ W ++  +R QHV T  +L    ++Y     GQ EV G+      N W A EG+++
Sbjct:   76 DDANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRC--SGQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMPSANTHNTWKAMEGIFI 208          
BLAST of CX671920 vs. ExPASy Swiss-Prot
Match: SDF2L_BOVIN (Stromal cell-derived factor 2-like protein 1 OS=Bos taurus GN=SDF2L1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.159e-20
Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = -3
Query:  310 DDANSYWIFKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYL 714
            DDANSYW  +        +G  ++ G  +RL H+ T K LH+H   SP++ N E+S FG + E D  D W V    SG+ W ++  +R QHV T  +L    ++Y     GQ EV G+    A N W A EG+++
Sbjct:   76 DDANSYWRIRGGTEGECPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLTNNQEVSAFGEDGEGDDLDLWTVRC--SGQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMASASAHNKWKAMEGIFI 208          
The following BLAST results are available for this feature:
BLAST of CX671920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SDF2_ARATH8.046e-6877.24Stromal cell-derived factor 2-like protein OS=Arab... [more]
SDF2_DICDI3.654e-2846.43Stromal cell-derived factor 2-like protein OS=Dict... [more]
SDF2_MOUSE5.111e-2238.89Stromal cell-derived factor 2 OS=Mus musculus GN=S... [more]
SDF2_HUMAN8.717e-2238.89Stromal cell-derived factor 2 OS=Homo sapiens GN=S... [more]
SDF2_BOVIN1.487e-2138.19Stromal cell-derived factor 2 OS=Bos taurus GN=SDF... [more]
SDF2L_MOUSE2.147e-2037.14Stromal cell-derived factor 2-like protein 1 OS=Mu... [more]
SDF2L_HUMAN8.159e-2037.04Stromal cell-derived factor 2-like protein 1 OS=Ho... [more]
SDF2L_BOVIN8.159e-2037.04Stromal cell-derived factor 2-like protein 1 OS=Bo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_13H08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13H08-O15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671920 ID=CX671920; Name=CX671920; organism=Citrus sinensis; type=EST; length=731bp
TTTTTTTTTTTTTTTTTGGTAATAAACATGCTTTATATCAATGTAAAGAT
CATCAAACAAACTGCTAGTTATGTTACCATGAGTGCTCCTCCAGTAGCAC
AAATTGCACACACAAACTACATCCGATAACATCTAATTTCAAGTCCCTGG
AAGTTATTTTTTTCCCCTCATCATATTAGAACATCAACAACTAATAGCTA
TATCTATAAGAACAGGCACCAGCCACCTAAATATCCAAAACCCAAGCACC
TGTTTTTACAGGGTAACTTCACATAATGTCACCAAAATCTACTTGCTCTC
AGTAACAGGGAGGTATACACCTTCAGCGGCTAACCACACATTATCAGCAC
GCTTTTCTCTGACGCCACAGACCTCTTGCTGTCCGCCAGCTATCCGCTGA
TATTTCTTGGGATGACTATGTAAGTAGCCACCTGTGTCAACGTGTTGAAG
CCGAATCCTTTGATCTTGCCTCCAAGTCTTTCCGCTACCCTCAATCATAA
CCCTCCAGTAATCACCAGTATCAGATTCCTCTTCGCCTCCGAAACAGCTA
ATCTCAAGGTTTCCTGAAATTGGGGACGCATGCAAATGGCTGTGCAGCCA
TTTTCTAGTTCTCATGTGCTGCAACCGGATAATAGTCCCACTCTTTATGG
TGTCGCCTTGTTTGGCAGATGCCCCTAGAATAGGCTTAAAAATCCAATAG
CTATTGGCATCATCAACATCAGGGAAACCCG
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