CX671919

Overview
NameCX671919
Unique NameCX671919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5114 contig Csv1_Contig5114:1..854. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX671919 vs. ExPASy Swiss-Prot
Match: SDF2_ARATH (Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana GN=At2g25110 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 3.994e-81
Identity = 132/165 (80.00%), Postives = 150/165 (90.91%), Query Frame = 2
Query:  329 ETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREK 823
            E VEITYG+ +KLMHEKTKFRLHSH+VPYGSGSGQQSVTGFP V D+NSYWIVKP+ G + KQGD +KSG  IRLQHM+TRKWLHSHLHASPISGNLE+SCFG +  SDTGD+W+++IEGSGKTW+QDQR+RLQH+DT GYLHSH KKYQRIAGGQQEVCG+REK
Sbjct:   33 EGVEITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLIIEGSGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREK 197          

HSP 2 Score: 25.7942 bits (55), Expect = 3.994e-81
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 3
Query:  819 KKRADNVWLAAE 854
            +K+ADN+WLAAE
Sbjct:  196 EKKADNIWLAAE 207          
BLAST of CX671919 vs. ExPASy Swiss-Prot
Match: SDF2_DICDI (Stromal cell-derived factor 2-like protein OS=Dictyostelium discoideum GN=DDB_G0284847 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.549e-39
Identity = 85/166 (51.20%), Postives = 106/166 (63.86%), Query Frame = 2
Query:  338 EITYGTVLKLMHEKTKFRLHSHEVPYGS---GSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHS-HPKKYQRIAGGQQEVCGVREK 823
            ++TYG+++KL H  T FRLHSH+V YGS   GSGQQSVTGFP+ DD NS W++K   G    QG  +K+G IIRL H  T+K LHSHL  SP++   E+SCFG   E DTGD W V  E SGK W + Q +R +H DT  YL +    KYQ    GQ E+ G + K
Sbjct:   31 KVTYGSMVKLAHVPTNFRLHSHKVSYGSSGGGSGQQSVTGFPENDDTNSLWVIKGPHGNRVLQGTVVKNGDIIRLVHSNTKKNLHSHLAVSPLTKQNEVSCFGENGEGDTGDNWIVETE-SGKEWMRGQVVRFKHADTKTYLQAIESAKYQNPIPGQIEISGGKSK 195          
BLAST of CX671919 vs. ExPASy Swiss-Prot
Match: SDF2_MOUSE (Stromal cell-derived factor 2 OS=Mus musculus GN=Sdf2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.567e-31
Identity = 72/160 (45.00%), Postives = 98/160 (61.25%), Query Frame = 2
Query:  341 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVRE 820
            +T G+V+KL++ +   RLHSH+V YGSGSGQQSVTG   VDD+NSYW ++       ++G  IK G  IRL H+ T + LHSH   SP+SGN E+S FG E E D  D W V+   +G  W +D  +R +H  T   L    ++Y R   GQ+EV G+ +
Sbjct:   24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTATVCERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC--NGPYWVRDGEVRFKHSSTDVLLSVTGEQYGRPISGQKEVHGMAQ 181          
BLAST of CX671919 vs. ExPASy Swiss-Prot
Match: SDF2_HUMAN (Stromal cell-derived factor 2 OS=Homo sapiens GN=SDF2 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.673e-31
Identity = 72/160 (45.00%), Postives = 98/160 (61.25%), Query Frame = 2
Query:  341 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVRE 820
            +T G+V+KL++ +   RLHSH+V YGSGSGQQSVTG   VDD+NSYW ++       ++G  IK G  IRL H+ T + LHSH   SP+SGN E+S FG E E D  D W V+   +G  W +D  +R +H  T   L    ++Y R   GQ+EV G+ +
Sbjct:   24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC--NGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQ 181          
BLAST of CX671919 vs. ExPASy Swiss-Prot
Match: SDF2_BOVIN (Stromal cell-derived factor 2 OS=Bos taurus GN=SDF2 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.560e-31
Identity = 71/160 (44.38%), Postives = 98/160 (61.25%), Query Frame = 2
Query:  341 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVRE 820
            +T G+V+KL++ +   RLHSH+V YGSGSGQQSVTG   VDD+NSYW ++       ++G  I+ G  IRL H+ T + LHSH   SP+SGN E+S FG E E D  D W V+   +G  W +D  +R +H  T   L    ++Y R   GQ+EV G+ +
Sbjct:   24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC--NGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQ 181          
BLAST of CX671919 vs. ExPASy Swiss-Prot
Match: SDF2L_MOUSE (Stromal cell-derived factor 2-like protein 1 OS=Mus musculus GN=Sdf2l1 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.733e-30
Identity = 69/158 (43.67%), Postives = 95/158 (60.13%), Query Frame = 2
Query:  341 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGV 814
            +T G+VLKL++   K RLHSH++ YGSGSGQQSVTG  + DDANSYW ++        +G  ++ G  +RL H+ T K LH+H   SP+S N E+S FG + E D  D W V    SG+ W ++  +R QHV T  +L    ++Y     GQ EV G+
Sbjct:   36 VTCGSVLKLLNTHHKVRLHSHDIKYGSGSGQQSVTGVEESDDANSYWRIRGGSEGGCPRGLPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRC--SGQHWEREASVRFQHVGTSVFLSVTGEQYGNPIRGQHEVHGM 191          
BLAST of CX671919 vs. ExPASy Swiss-Prot
Match: SDF2L_HUMAN (Stromal cell-derived factor 2-like protein 1 OS=Homo sapiens GN=SDF2L1 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 5.041e-30
Identity = 68/158 (43.04%), Postives = 94/158 (59.49%), Query Frame = 2
Query:  341 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGV 814
            +T G+VLKL++   + RLHSH++ YGSGSGQQSVTG    DDANSYW ++        +G  ++ G  +RL H+ T K LH+H   SP+S N E+S FG + E D  D W V    SG+ W ++  +R QHV T  +L    ++Y     GQ EV G+
Sbjct:   36 VTCGSVLKLLNTHHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRC--SGQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGM 191          
BLAST of CX671919 vs. ExPASy Swiss-Prot
Match: SDF2L_BOVIN (Stromal cell-derived factor 2-like protein 1 OS=Bos taurus GN=SDF2L1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.599e-30
Identity = 67/158 (42.41%), Postives = 94/158 (59.49%), Query Frame = 2
Query:  341 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGV 814
            +T G+VLKL + + + RLHSH++ YGSGSGQQSVTG    DDANSYW ++        +G  ++ G  +RL H+ T K LH+H   SP++ N E+S FG + E D  D W V    SG+ W ++  +R QHV T  +L    ++Y     GQ EV G+
Sbjct:   36 VTCGSVLKLFNTQHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYWRIRGGTEGECPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLTNNQEVSAFGEDGEGDDLDLWTVRC--SGQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGM 191          
BLAST of CX671919 vs. ExPASy Swiss-Prot
Match: PMT5_YEAST (Dolichyl-phosphate-mannose--protein mannosyltransferase 5 OS=Saccharomyces cerevisiae GN=PMT5 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.574e-15
Identity = 66/178 (37.08%), Postives = 89/178 (50.00%), Query Frame = 2
Query:  329 ETV-EITYGTVLKLMHEKTKFR-LHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDT----IKSGTIIRLQHMRTRKWLHSHLHASPISGNL----EISCFGGEE-ESDTGDYWRVMIEGSGKTWRQDQ--------RIRLQHVDTGGYLHSHPKKYQRIAGGQQEV 805
            ETV E+  G+ + L H  T    LHSH   Y +GS QQ VT +P +D  N+ WI++  L     +  T    +  GTII+L+ ++    LHSH H  P+S N     E+SC+G E  E D  D W + I+         Q        + RL+H  TG YL SHP+K      GQQEV
Sbjct:  318 ETVAEVAVGSAVSLNHVGTAGGYLHSHLHNYPAGSMQQQVTLYPHIDQ-NNKWIIE--LAEHPNENVTSFQNLTDGTIIKLRQLKNGCRLHSHDHKPPVSQNADWQKEVSCYGYEGFEGDINDDWIIEIDKKRSEPGPAQEHIRAIETKFRLKHYLTGCYLFSHPEKLPEWGFGQQEV 492          
BLAST of CX671919 vs. ExPASy Swiss-Prot
Match: PMT1_YEAST (Dolichyl-phosphate-mannose--protein mannosyltransferase 1 OS=Saccharomyces cerevisiae GN=PMT1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.925e-13
Identity = 59/172 (34.30%), Postives = 82/172 (47.67%), Query Frame = 2
Query:  338 EITYGTVLKLMHEKTKFR-LHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVK--PILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGN----LEISCFG-GEEESDTGDYWRVMIE--------GSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEV 805
            ++  G+++ L H  T    LHSH   Y +GS QQ  T +P +D AN+ W+++     G S      +  GT +RL H  TR  LHSH H  P+S +     E+SC+G    + D  D W V I+           +    D + RL+H  TG YL SH  K       QQEV
Sbjct:  326 DVGIGSIISLRHLSTMGGYLHSHSHNYPAGSEQQQSTLYPHMD-ANNDWLLELYNAPGESLTTFQNLTDGTKVRLFHTVTRCRLHSHDHKPPVSESSDWQKEVSCYGYSGFDGDANDDWVVEIDKKNSAPGVAQERVIALDTKFRLRHAMTGCYLFSHEVKLPAWGFEQQEV 496          
The following BLAST results are available for this feature:
BLAST of CX671919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SDF2_ARATH3.994e-8180.00Stromal cell-derived factor 2-like protein OS=Arab... [more]
SDF2_DICDI4.549e-3951.20Stromal cell-derived factor 2-like protein OS=Dict... [more]
SDF2_MOUSE1.567e-3145.00Stromal cell-derived factor 2 OS=Mus musculus GN=S... [more]
SDF2_HUMAN2.673e-3145.00Stromal cell-derived factor 2 OS=Homo sapiens GN=S... [more]
SDF2_BOVIN4.560e-3144.38Stromal cell-derived factor 2 OS=Bos taurus GN=SDF... [more]
SDF2L_MOUSE1.733e-3043.67Stromal cell-derived factor 2-like protein 1 OS=Mu... [more]
SDF2L_HUMAN5.041e-3043.04Stromal cell-derived factor 2-like protein 1 OS=Ho... [more]
SDF2L_BOVIN8.599e-3042.41Stromal cell-derived factor 2-like protein 1 OS=Bo... [more]
PMT5_YEAST1.574e-1537.08Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
PMT1_YEAST1.925e-1334.30Dolichyl-phosphate-mannose--protein mannosyltransf... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13H08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13H08-O15-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671919 ID=CX671919; Name=CX671919; organism=Citrus sinensis; type=EST; length=854bp
CAAAACCAAAACTCACCAAAGGCTCTCTCCGTGAACTCTGGATAGATCCC
CCGATCGCACCGTGGCTTCGTCCGGGGCGCCGCCGACGACGCAATCCCTC
ACTCAAAGAAGAAAACAAACATCATCAACCGAAAACGCTAACCGCAGTAG
AGATTCGATAAGAGGTTCGCGAGCGAGACCTCAAAACGACTTTCCTTTTT
GGCAACAGAACTGGTTCTTAGGTTTGCTCTTTTTCATGGCAATGGTATTC
TTCGCTCTCGCTGTCTTCCTCTTCCTCGGCCTCAATCTCGACGAATCTTC
TCCTTCCTCCGCCTCCGCCGCTTCCTCTGAAACTGTCGAGATTACTTATG
GGACAGTTCTCAAGTTGATGCATGAGAAGACAAAATTCCGGCTGCATTCA
CATGAAGTGCCATATGGTTCTGGCAGCGGGCAGCAATCTGTTACGGGTTT
CCCTGATGTTGATGATGCCAATAGCTATTGGATTGTTAAGCCTATTCTAG
GGGCATCTGCCAAACAAGGCGACACCATAAAGAGTGGGACTATTATCCGG
TTGCAGCACATGAGAACTAGAAAATGGCTGCACAGCCATTTGCATGCGTC
CCCAATTTCAGGAAACCTTGAGATTAGCTGTTTCGGAGGCGAAGAGGAAT
CTGATACTGGTGATTACTGGAGGGTTATGATTGAGGGTAGCGGAAAGACT
TGGAGGCAAGATCAAAGGATTCGGCTTCAACACGTTGACACAGGTGGCTA
CTTACATAGTCATCCCAAGAAATATCAGCGGATAGCTGGCGGACAGCAAG
AGGTCTGTGGCGTCAGAGAAAAAGCGTGCTGATAATGTGTGGTTAGCCGC
TGAA
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