CX671915
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RK12_NICSY (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 9.035e-41 Identity = 97/163 (59.51%), Postives = 110/163 (67.48%), Query Frame = 3 Query: 147 PYLKQFLKFPSYPLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSV 635 P+ K+ L+FP Q RA+ LRPL AVEAPEK+ +L EIS+LTL + LV+YLQDKL KTEFDVVIDEVPSNARIA IKAVR LT+LALKEAK+LIEGLPKKFKEGVSKD+AE AKKQLEEAGAKVS+ Sbjct: 26 PFPKKTLEFPIRTPKLQNRRATFLRPLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAAEAPAVVEE---KTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSI 185
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RK12_TOBAC (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum GN=RPL12 PE=1 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 5.856e-40 Identity = 96/163 (58.90%), Postives = 109/163 (66.87%), Query Frame = 3 Query: 147 PYLKQFLKFPSYPLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSV 635 P+ K+ L+FP RA+ LRPL AVEAPEK+ +L EIS+LTL + LV+YLQDKL KTEFDVVIDEVPSNARIA IKAVR LT+LALKEAK+LIEGLPKKFKEGVSKD+AE AKKQLEEAGAKVS+ Sbjct: 26 PFPKKALEFPIRTPKLHHRRATFLRPLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAAEAPAVVEE---KTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSI 185
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RK121_ARATH (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana GN=RPL12A PE=1 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 2.225e-39 Identity = 91/148 (61.49%), Postives = 107/148 (72.30%), Query Frame = 3 Query: 192 TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSV 635 T T+RA+HLRP+ AVEAPEKIEK+ +EISSLTL+E LVDYLQDK +TEFDVVI+EVPS++RIAVIKAVR LT+LALKEAK+LIEGLPKKFKEG++KD+AE AKK LEEAGAKVS+ Sbjct: 46 TLTHRATHLRPIAAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGGAAAVVEE---QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEEAGAKVSI 190
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RK12_SPIOL (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea GN=RPL12 PE=1 SV=2) HSP 1 Score: 160.614 bits (405), Expect = 8.456e-39 Identity = 95/168 (56.55%), Postives = 111/168 (66.07%), Query Frame = 3 Query: 147 PYLKQFLKFP----SYPLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSVV 638 P Q L+FP + P+ + R + LRP+ AVEAPEKIE+L T++S LTL+E LVD+LQDKL KTEFDV IDEVPSNARI+VIKAVR LT+L LKEAK+LIEGLPKK KEGVSKDDAE AKKQLE+AGAKVS+V Sbjct: 25 PKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEE---KTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLEDAGAKVSIV 189
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RK123_ARATH (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=2) HSP 1 Score: 158.303 bits (399), Expect = 4.197e-38 Identity = 90/157 (57.32%), Postives = 110/157 (70.06%), Query Frame = 3 Query: 165 LKFPSYPLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSV 635 ++FP + ++RA +LRP+ AVEAPEKIEK+ +EISSLTL+E LVDYLQDK +TEFDVVI+EVPS++RIAVIKAVR LT+LALKEAK+LIEGLPKKFKEG++KD+AE AKK LEEAGAKVS+ Sbjct: 33 IEFPFRLSSSSSHRAINLRPISAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGGAAAVVEE---QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEEAGAKVSI 186
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RK12_ORYSJ (50S ribosomal protein L12, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL12-2 PE=2 SV=2) HSP 1 Score: 130.954 bits (328), Expect = 7.175e-30 Identity = 79/151 (52.32%), Postives = 93/151 (61.59%), Query Frame = 3 Query: 183 PLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSV 635 P + RA + A E+P+ +E L I+ LTL+E LVD+LQ++L KTEFDVVI+EVPS+ARIA IK VR LTNLALKEAKDLIEGLPKK KEGVSKD+AE AKKQLEE GAKVS+ Sbjct: 35 PSRARPRRAVAVVASTATESPKVLE-LGDAIAGLTLEEARGLVDHLQERLGVSAAAFAPAAVVAAPGAGGAGAAADEAPAEKTEFDVVIEEVPSSARIASIKVVRALTNLALKEAKDLIEGLPKKVKEGVSKDEAEDAKKQLEEVGAKVSI 184
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RK122_ARATH (50S ribosomal protein L12-2, chloroplastic OS=Arabidopsis thaliana GN=RPL12B PE=2 SV=2) HSP 1 Score: 130.954 bits (328), Expect = 7.175e-30 Identity = 79/169 (46.75%), Postives = 102/169 (60.36%), Query Frame = 3 Query: 171 FPSYPLP-------------TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSVV 638 FPS PL T ++RA +L P+ AV+ P+KI+K+ +EISSLTL+E LVDY+QDK +T FDVVI++VP RIAVI A+R +T+L+L E+K+LIEG PKKFKEGV+KD+AE K QLEEAGAKVS+V Sbjct: 27 FPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISAVKTPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNGGATASVER--QTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEEDKTQLEEAGAKVSIV 193
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RK121_SECCE (50S ribosomal protein L12-1, chloroplastic OS=Secale cereale GN=RPL12-1 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.496e-27 Identity = 77/151 (50.99%), Postives = 94/151 (62.25%), Query Frame = 3 Query: 183 PLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSV 635 P+ + RA+ + A E+P+ +E L I+ LTL+E NLVD+LQ++L +TEFDVVI+EVPS+ARIA IK VR LTNLALKEAKDLIEGLPKK KE VSKD+AE AKKQLE GAKVS+ Sbjct: 31 PVANRRRRAAAVAST-ATESPKVLE-LGDAIAGLTLEEARNLVDHLQERLCVSAASFPPAAAGLRAAAVEEAPVE------QTEFDVVIEEVPSSARIATIKIVRALTNLALKEAKDLIEGLPKKLKEAVSKDEAEEAKKQLEGVGAKVSI 173
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RK122_SECCE (50S ribosomal protein L12-2, chloroplastic OS=Secale cereale GN=RPL12-2 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.954e-27 Identity = 75/150 (50.00%), Postives = 87/150 (58.00%), Query Frame = 3 Query: 186 LPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSV 635 LP R V K+ +L I+ LTL+E NLVD+LQ++L +TEFDVVI+EVPS+ARIA IK VR LTNLALKEAKDLIEGLPKK KE VSKD+AE AKKQLE GAKVS+ Sbjct: 30 LPVANRRRRAAAVASTVTESPKVLELGDAIAGLTLEEARNLVDHLQERLCVSAASFPPAAAGLRAAAVEEAPVE------QTEFDVVIEEVPSSARIATIKIVRALTNLALKEAKDLIEGLPKKLKEAVSKDEAEEAKKQLEGVGAKVSI 173
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RL7_SYNP6 (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplL PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.216e-22 Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 3 Query: 426 KTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSV 635 KTEFDVV++EVP++ +IAV+K VR +T L LKEAKDL+E PK KEGVSKDDAEAAKK+LEEAGAKVSV Sbjct: 58 KTEFDVVLEEVPADKKIAVLKVVRGITGLGLKEAKDLVEAAPKPIKEGVSKDDAEAAKKELEEAGAKVSV 127 The following BLAST results are available for this feature:
BLAST of CX671915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671915 ID=CX671915; Name=CX671915; organism=Citrus sinensis; type=EST; length=761bpback to top |