CX671915

Overview
NameCX671915
Unique NameCX671915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5113 contig Csv1_Contig5113:1..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RK12_NICSY (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.035e-41
Identity = 97/163 (59.51%), Postives = 110/163 (67.48%), Query Frame = 3
Query:  147 PYLKQFLKFPSYPLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSV 635
            P+ K+ L+FP      Q  RA+ LRPL AVEAPEK+ +L  EIS+LTL +   LV+YLQDKL                               KTEFDVVIDEVPSNARIA IKAVR LT+LALKEAK+LIEGLPKKFKEGVSKD+AE AKKQLEEAGAKVS+
Sbjct:   26 PFPKKTLEFPIRTPKLQNRRATFLRPLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAAEAPAVVEE---KTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSI 185          
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RK12_TOBAC (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum GN=RPL12 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.856e-40
Identity = 96/163 (58.90%), Postives = 109/163 (66.87%), Query Frame = 3
Query:  147 PYLKQFLKFPSYPLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSV 635
            P+ K+ L+FP         RA+ LRPL AVEAPEK+ +L  EIS+LTL +   LV+YLQDKL                               KTEFDVVIDEVPSNARIA IKAVR LT+LALKEAK+LIEGLPKKFKEGVSKD+AE AKKQLEEAGAKVS+
Sbjct:   26 PFPKKALEFPIRTPKLHHRRATFLRPLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAAEAPAVVEE---KTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSI 185          
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RK121_ARATH (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana GN=RPL12A PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.225e-39
Identity = 91/148 (61.49%), Postives = 107/148 (72.30%), Query Frame = 3
Query:  192 TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSV 635
            T T+RA+HLRP+ AVEAPEKIEK+ +EISSLTL+E   LVDYLQDK                                +TEFDVVI+EVPS++RIAVIKAVR LT+LALKEAK+LIEGLPKKFKEG++KD+AE AKK LEEAGAKVS+
Sbjct:   46 TLTHRATHLRPIAAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGGAAAVVEE---QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEEAGAKVSI 190          
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RK12_SPIOL (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea GN=RPL12 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 8.456e-39
Identity = 95/168 (56.55%), Postives = 111/168 (66.07%), Query Frame = 3
Query:  147 PYLKQFLKFP----SYPLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSVV 638
            P   Q L+FP    + P+   + R + LRP+ AVEAPEKIE+L T++S LTL+E   LVD+LQDKL                               KTEFDV IDEVPSNARI+VIKAVR LT+L LKEAK+LIEGLPKK KEGVSKDDAE AKKQLE+AGAKVS+V
Sbjct:   25 PKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEE---KTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLEDAGAKVSIV 189          
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RK123_ARATH (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 4.197e-38
Identity = 90/157 (57.32%), Postives = 110/157 (70.06%), Query Frame = 3
Query:  165 LKFPSYPLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSV 635
            ++FP     + ++RA +LRP+ AVEAPEKIEK+ +EISSLTL+E   LVDYLQDK                                +TEFDVVI+EVPS++RIAVIKAVR LT+LALKEAK+LIEGLPKKFKEG++KD+AE AKK LEEAGAKVS+
Sbjct:   33 IEFPFRLSSSSSHRAINLRPISAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGGAAAVVEE---QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEEAGAKVSI 186          
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RK12_ORYSJ (50S ribosomal protein L12, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL12-2 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 7.175e-30
Identity = 79/151 (52.32%), Postives = 93/151 (61.59%), Query Frame = 3
Query:  183 PLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSV 635
            P   +  RA  +    A E+P+ +E L   I+ LTL+E   LVD+LQ++L                               KTEFDVVI+EVPS+ARIA IK VR LTNLALKEAKDLIEGLPKK KEGVSKD+AE AKKQLEE GAKVS+
Sbjct:   35 PSRARPRRAVAVVASTATESPKVLE-LGDAIAGLTLEEARGLVDHLQERLGVSAAAFAPAAVVAAPGAGGAGAAADEAPAEKTEFDVVIEEVPSSARIASIKVVRALTNLALKEAKDLIEGLPKKVKEGVSKDEAEDAKKQLEEVGAKVSI 184          
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RK122_ARATH (50S ribosomal protein L12-2, chloroplastic OS=Arabidopsis thaliana GN=RPL12B PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 7.175e-30
Identity = 79/169 (46.75%), Postives = 102/169 (60.36%), Query Frame = 3
Query:  171 FPSYPLP-------------TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSVV 638
            FPS PL              T ++RA +L P+ AV+ P+KI+K+ +EISSLTL+E   LVDY+QDK                                +T FDVVI++VP   RIAVI A+R +T+L+L E+K+LIEG PKKFKEGV+KD+AE  K QLEEAGAKVS+V
Sbjct:   27 FPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISAVKTPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNGGATASVER--QTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEEDKTQLEEAGAKVSIV 193          
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RK121_SECCE (50S ribosomal protein L12-1, chloroplastic OS=Secale cereale GN=RPL12-1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.496e-27
Identity = 77/151 (50.99%), Postives = 94/151 (62.25%), Query Frame = 3
Query:  183 PLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSV 635
            P+  +  RA+ +    A E+P+ +E L   I+ LTL+E  NLVD+LQ++L                               +TEFDVVI+EVPS+ARIA IK VR LTNLALKEAKDLIEGLPKK KE VSKD+AE AKKQLE  GAKVS+
Sbjct:   31 PVANRRRRAAAVAST-ATESPKVLE-LGDAIAGLTLEEARNLVDHLQERLCVSAASFPPAAAGLRAAAVEEAPVE------QTEFDVVIEEVPSSARIATIKIVRALTNLALKEAKDLIEGLPKKLKEAVSKDEAEEAKKQLEGVGAKVSI 173          
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RK122_SECCE (50S ribosomal protein L12-2, chloroplastic OS=Secale cereale GN=RPL12-2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.954e-27
Identity = 75/150 (50.00%), Postives = 87/150 (58.00%), Query Frame = 3
Query:  186 LPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSV 635
            LP    R         V    K+ +L   I+ LTL+E  NLVD+LQ++L                               +TEFDVVI+EVPS+ARIA IK VR LTNLALKEAKDLIEGLPKK KE VSKD+AE AKKQLE  GAKVS+
Sbjct:   30 LPVANRRRRAAAVASTVTESPKVLELGDAIAGLTLEEARNLVDHLQERLCVSAASFPPAAAGLRAAAVEEAPVE------QTEFDVVIEEVPSSARIATIKIVRALTNLALKEAKDLIEGLPKKLKEAVSKDEAEEAKKQLEGVGAKVSI 173          
BLAST of CX671915 vs. ExPASy Swiss-Prot
Match: RL7_SYNP6 (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.216e-22
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 3
Query:  426 KTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKVSV 635
            KTEFDVV++EVP++ +IAV+K VR +T L LKEAKDL+E  PK  KEGVSKDDAEAAKK+LEEAGAKVSV
Sbjct:   58 KTEFDVVLEEVPADKKIAVLKVVRGITGLGLKEAKDLVEAAPKPIKEGVSKDDAEAAKKELEEAGAKVSV 127          
The following BLAST results are available for this feature:
BLAST of CX671915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK12_NICSY9.035e-4159.5150S ribosomal protein L12, chloroplastic OS=Nicoti... [more]
RK12_TOBAC5.856e-4058.9050S ribosomal protein L12, chloroplastic OS=Nicoti... [more]
RK121_ARATH2.225e-3961.4950S ribosomal protein L12-1, chloroplastic OS=Arab... [more]
RK12_SPIOL8.456e-3956.5550S ribosomal protein L12, chloroplastic OS=Spinac... [more]
RK123_ARATH4.197e-3857.3250S ribosomal protein L12-3, chloroplastic OS=Arab... [more]
RK12_ORYSJ7.175e-3052.3250S ribosomal protein L12, chloroplastic OS=Oryza ... [more]
RK122_ARATH7.175e-3046.7550S ribosomal protein L12-2, chloroplastic OS=Arab... [more]
RK121_SECCE1.496e-2750.9950S ribosomal protein L12-1, chloroplastic OS=Seca... [more]
RK122_SECCE1.954e-2750.0050S ribosomal protein L12-2, chloroplastic OS=Seca... [more]
RL7_SYNP64.216e-2274.2950S ribosomal protein L7/L12 OS=Synechococcus sp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13H05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13H05-O9-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671915 ID=CX671915; Name=CX671915; organism=Citrus sinensis; type=EST; length=761bp
GCACAGCCCCTTATCCTTTTGCTATCTTCGTTTCTCACTCTCTTCTGCTC
CTCAAACCTCCAAAATCCAAAAAAATGGCAACAATCTCAGCAACGGCGGC
GGCAACAACAACACTCACTCTCCGTTCACGCCCCACTCCCTCCTCCCCTT
ACCTCAAACAATTCCTTAAATTCCCATCTTACCCTCTCCCCACCCAAACC
AACCGAGCTTCTCACTTGCGCCCCCTTTGCGCTGTCGAAGCCCCCGAGAA
AATCGAAAAGCTCGCTACCGAGATCTCTTCCCTCACTCTCCAAGAAGTCT
GCAACCTCGTCGACTACCTCCAGGATAAGCTCGGCGTCTCCGCCGCCGCC
TTCGCCCCCGCCGCCGCAGTGGGTGTCGCCCCCGGTGCCCCCGGAGCCGA
AGCGCCTGCTTCCGTGGAGGAGGAGAAGACGGAGTTCGACGTCGTCATTG
ACGAGGTGCCCAGTAATGCGAGAATCGCGGTCATTAAGGCCGTGAGAACG
CTGACGAACTTGGCCTTGAAAGAGGCTAAGGACCTTATTGAAGGGTTGCC
TAAGAAGTTCAAAGAAGGCGTGTCGAAAGATGATGCTGAAGCTGCTAAGA
AACAGCTTGAAGAAGCTGGCGCTAAAGTTTCCGTTGTTTAGAGATGATTA
TGTTGATTTTTGTGTGCTCTCTCTTTTTTTTTTTTTTTTTGGTAATTTGT
AGTTTTAAAAAAGTGTAATTTGGATTAGTAGTGAACATGGGCTTTTTCTG
TTTTTGCACAT
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