CX671912

Overview
NameCX671912
Unique NameCX671912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671912_ssr211 microsatellite CX671912_ssr211:211..222. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671912_ssr51 microsatellite CX671912_ssr51:51..70. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRK11_ARATH (Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 2.424e-44
Identity = 83/101 (82.18%), Postives = 93/101 (92.08%), Query Frame = -1
Query:  254 RKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVG-LVFES 553
            RKNR+K+T+RVPAIS+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCST RGCPARKHVERA DDP MLIVTYEGEHRH+Q+AMQEN + +G+  LVF S
Sbjct:  224 RKNRMKRTVRVPAISAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRHNQSAMQENISSSGINDLVFAS 324          
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRK17_ARATH (Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 7.054e-44
Identity = 81/100 (81.00%), Postives = 90/100 (90.00%), Query Frame = -1
Query:  254 RKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVGLVFES 553
            RKNR+K+T+RVPA+S+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCST RGCPARKHVERA DD TMLIVTYEGEHRH Q+ MQE+  P+  GLVF S
Sbjct:  221 RKNRMKRTVRVPAVSAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDSTMLIVTYEGEHRHHQSTMQEHVTPSVSGLVFGS 320          
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRK21_ARATH (Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.430e-36
Identity = 67/86 (77.91%), Postives = 77/86 (89.53%), Query Frame = -1
Query:  296 RKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQ 553
            RK+RV+++IRVPAIS+K+ADIPPD+YSWRKYGQKPIKGSPYPRGYYKCS+MRGCPARKHVER  +DP MLIVTYE EH H +   Q
Sbjct:  291 RKHRVRRSIRVPAISNKVADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERCLEDPAMLIVTYEAEHNHPKLPSQ 376          
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRK39_ARATH (Probable WRKY transcription factor 39 OS=Arabidopsis thaliana GN=WRKY39 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.413e-36
Identity = 68/89 (76.40%), Postives = 80/89 (89.89%), Query Frame = -1
Query:  287 RKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENA 553
            RK RVK++I+VPAIS+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCS++RGCPARKHVER  D+ +MLIVTYEGEH HS+    ++A
Sbjct:  240 RKLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCIDETSMLIVTYEGEHNHSRILSSQSA 328          
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRK74_ARATH (Probable WRKY transcription factor 74 OS=Arabidopsis thaliana GN=WRKY74 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.206e-35
Identity = 67/89 (75.28%), Postives = 80/89 (89.89%), Query Frame = -1
Query:  287 RKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENA 553
            RK RVK++I+VPAIS+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCS++RGCPARKHVER  ++ +MLIVTYEGEH HS+    ++A
Sbjct:  240 RKLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVEETSMLIVTYEGEHNHSRILSSQSA 328          
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRK15_ARATH (Probable WRKY transcription factor 15 OS=Arabidopsis thaliana GN=WRKY15 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.817e-35
Identity = 68/101 (67.33%), Postives = 85/101 (84.16%), Query Frame = -1
Query:  251 RKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVGLVFEST 553
            RK + ++ IRVPAIS+K++D+PPD+YSWRKYGQKPIKGSP+PRGYYKCS++RGCPARKHVERA DD +MLIVTYEG+H HS +A  + A  A   L+ ES+
Sbjct:  218 RKIKQRRIIRVPAISAKMSDVPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAADDSSMLIVTYEGDHNHSLSA-ADLAGAAVADLILESS 317          
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRKY1_MAIZE (Protein WRKY1 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.021e-34
Identity = 63/86 (73.26%), Postives = 78/86 (90.70%), Query Frame = -1
Query:  296 RKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQ 553
            RK R++++I+VPAIS+K+ADIP DE+SWRKYGQKPIKGSP+PRGYYKCS++RGCPARKHVER  DDP+MLIVTYEG+H H++   Q
Sbjct:  310 RKLRIRRSIKVPAISNKVADIPADEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVDDPSMLIVTYEGDHNHNRVLAQ 395          
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRKY7_ARATH (Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.333e-34
Identity = 65/81 (80.25%), Postives = 75/81 (92.59%), Query Frame = -1
Query:  311 RKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHS 553
            RK+RVK+ IRVPA+SSK+ADIP DE+SWRKYGQKPIKGSP+PRGYYKCS++RGCPARKHVERA DD  MLIVTYEG+H H+
Sbjct:  259 RKSRVKRVIRVPAVSSKMADIPSDEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDAMMLIVTYEGDHNHA 339          
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRK65_ARATH (Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.997e-22
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = -1
Query:  314 PPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 490
            P D ++WRKYGQKPIKGSPYPRGYY+CS+ +GCPARK VER+ DDPTM+++TY  EH H
Sbjct:   73 PSDSWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRDDPTMILITYTSEHNH 131          
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRK35_ARATH (Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.406e-22
Identity = 47/85 (55.29%), Postives = 64/85 (75.29%), Query Frame = -1
Query:  314 RKNRVKKTIRVPA---ISSKIAD--IPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 553
            RK++ KK + +PA   ++S+ +   +P D ++WRKYGQKPIKGSPYPRGYY+CS+ +GC ARK VER+  DP ML++TY  EH H
Sbjct:  188 RKSQAKKVVCIPAPAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNH 272          
The following BLAST results are available for this feature:
BLAST of CX671912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
WRK11_ARATH2.424e-4482.18Probable WRKY transcription factor 11 OS=Arabidops... [more]
WRK17_ARATH7.054e-4481.00Probable WRKY transcription factor 17 OS=Arabidops... [more]
WRK21_ARATH2.430e-3677.91Probable WRKY transcription factor 21 OS=Arabidops... [more]
WRK39_ARATH5.413e-3676.40Probable WRKY transcription factor 39 OS=Arabidops... [more]
WRK74_ARATH1.206e-3575.28Probable WRKY transcription factor 74 OS=Arabidops... [more]
WRK15_ARATH7.817e-3567.33Probable WRKY transcription factor 15 OS=Arabidops... [more]
WRKY1_MAIZE1.021e-3473.26Protein WRKY1 OS=Zea mays PE=1 SV=1[more]
WRKY7_ARATH1.333e-3480.25Probable WRKY transcription factor 7 OS=Arabidopsi... [more]
WRK65_ARATH1.997e-2271.19Probable WRKY transcription factor 65 OS=Arabidops... [more]
WRK35_ARATH3.406e-2255.29Probable WRKY transcription factor 35 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13H04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13H04-O7-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671912 ID=CX671912; Name=CX671912; organism=Citrus sinensis; type=EST; length=934bp
TTTTGCACATAATAAAACAATCCCATATCATATAACTACCGAATGACAAT
TTAATTAATTAATTAATTAATTTTTTTTTTTAAATTTTACTCCAACAAAA
TTTACATTAATACCCTCCATCCGACCTTCCATCGGCCCCGCAACAACATC
GATATTAGAAAATGCTACCGCGTCTTGTCATTATCTTCCCACCCACCTTC
CTTTATCAATTCTCTCTCTCTCTACTTTTTCTTTTTTGTTCATTTTCTCA
CGTTGACTCGAAAACCAAACCCACTCCAGCAGGGGCCGCGTTCTCCTGCA
TCGCGGCCTGCGAATGCCGGTGCTCTCCTTCGTACGTCACAATCAGCATC
GTTGGATCGTCTGGTGCCCTCTCCACGTGTTTCCTGGCTGGGCACCCTCT
CATTGTACTGCACTTGTAATAGCCGCGTGGGTATGGTGAGCCCTTGATCG
GCTTTTGACCATACTTCCTCCAAGAATACTCGTCCGGTGGAATATCGGCT
ATTTTTGAACTAATCGCCGGCACTCTAATAGTTTTCTTTACTCGGTTTTT
CCTGAAATCAATTAAAAAAAAATAAATTAGACGTCAACTATTTCTTCCCA
ATATCTCACTATCGTACGCTGTTGGTGCAATCTATTATGAGCTGTGCGTG
TTCTGTCTACGGTCTACGCTAACTCCTAACTGTGTCAAAGTCAAAATCAA
CGTAACCAAGTCTAAGCACGCCTCAGAAAAATGGGAAAATGACAAAACTA
ACACAAATTTCAATACTTTTTTTATTCGAGTCTTTATTGACATCGTTAGG
CGTGCGCTGTCTACTCCTTCGCAGCTATGCGTTTACCCAACAACTCGTTG
ACCGGTAACTCGACCGATTTCTCAGATCGAGTCCGATTCCAACCGTCTCN
AACTCGACCGAATTTCGTAAATAACAAACAAAAT
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